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Analysis of genomic poly(A) sites
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 Searching for Transcripts 
Branchiostoma belcheri
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 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_314330R 
Gene name: tlr22
Chromosome: Sc0001700(-)
Gene locus: Sc0001700(-):4854-7739
Gene description:

Transcript id: Bb_314330R 
Transcript name: tlr22
Transcript locus: Sc0001700(-):4854-7739

Start codon: 7737
Stop codon: 4854
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0031224  Cellular Component  intrinsic to membrane 
 QuickGO:0007165  Biological Process  signal transduction 
 QuickGO:0004888  Molecular Function  transmembrane receptor activity 
 QuickGO:0005515  Molecular Function  protein binding 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR001611  72-125  1.0E-12  Leucine-rich repeat
  IPR001611  405-451  8.1E-12  Leucine-rich repeat
  IPR001611  497-553  1.3E-8  Leucine-rich repeat
  IPR001611  616-675  9.6E-15  Leucine-rich repeat
  IPR000157  861-941  4.0E-12  Toll/interleukin-1 receptor homology (TIR) domain
  KEGG annotation matched  
 KEGG Id Definition
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_314330R 0bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_314330R tlr22 0aa
Bb_314330R tlr22 ,.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

Jan 11, 2021. Last updated  
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