Sequence Query, APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals

Tips for Searching datasets

[X]

[1]. For APASdbs, a genome-wide database describing alternative poly(A) sites and detailing the heterogeneous cleavage sites dwonstream each poly(A) signal in various biological conditions and deseases. It supports query by using a ID (currently Ensembl or UCSC ID only), gene name, symbols or description variable in publications and databases. Searching examples: cxcl12a, cxcl, chemokine, also ENSDARG00000037116 (Ensembl id only for Danio rerio), uc009dsc.2, uc003qht.2 (UCSC id only for Mus musculus and Homo sapiens).

[2]. For Transcripts, that annotates and stores transcript sequences, querying by using a ID, gene name, symbols or description. Example: ssr4, ssr, TLR, caspase, also Bb_073760F are available for v7h2, but v15h11 and v18h27 currently only surport id query.

[3]. For Proteins, it saves proteins sequences to supports Blast, providing query by protein ID in databases, For example Bb_073760F.

[4]. For ESTs, it stores Expressed sequence tags to supports Blast, but also provides obtaining sequences by EST-ID in databases, For example est_xb_1526.

[5]. For Genomes, it collects genome sequences and also supports Blast, querying by using a chr ID in publication and databases such as Sc0000024 (only for lancelet), chr1, chr22 and so on.

[6]. For ncRNAs, that collects ncRNAs such as tRNA, snRNA, rRNA, miRNA and so on. It provides Blast and querying by Ensembl Transcript or Gene ID. For example, ENSDART00000128920.

[7]. For miRNAs, it stores miRNAs sequences and supply Blast and searching by miRBase ID and Name, like bfl-miR-2058, dre-miR-430a and MIMAT0001423.

InterPro protein Families and Domains annotation matched: