|
Tips for Searching datasets |
[X] |
| [1]. For APASdbs,
a genome-wide database describing alternative poly(A) sites
and detailing the heterogeneous cleavage sites dwonstream
each poly(A) signal in various biological conditions and
deseases. It supports query by using a ID (currently Ensembl
or UCSC ID only), gene name, symbols or description variable
in publications and databases. Searching examples: cxcl12a, cxcl, chemokine,
also ENSDARG00000037116 (Ensembl id only for Danio rerio), uc009dsc.2, uc003qht.2 (UCSC id only for Mus musculus and Homo sapiens). |
| [2]. For Transcripts,
that annotates and stores transcript sequences,
querying by using a ID, gene name,
symbols or description. Example: ssr4, ssr, TLR, caspase,
also Bb_073760F are available for v7h2, but v15h11 and v18h27 currently only surport id query. |
| [3]. For Proteins,
it saves proteins sequences to supports Blast, providing query
by protein ID in databases, For
example Bb_073760F. |
| [4]. For ESTs, it stores Expressed sequence tags to supports Blast, but also provides obtaining sequences
by EST-ID in databases, For
example est_xb_1526. |
| [5]. For Genomes, it
collects genome sequences and also supports Blast, querying
by using a chr ID in publication and databases such as Sc0000024 (only for lancelet), chr1, chr22 and so on. |
| [6]. For ncRNAs, that collects ncRNAs
such as tRNA, snRNA, rRNA, miRNA and so on. It provides
Blast and querying by Ensembl Transcript or Gene ID. For
example, ENSDART00000128920. |
| [7]. For miRNAs, it stores miRNAs sequences and supply
Blast and searching by miRBase ID and Name, like bfl-miR-2058, dre-miR-430a and MIMAT0001423. |
| |
|
| |
|
