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Pooled
13.5 dpf
15.5 dpf
18.5 dpf
0 dpp
6 dpp
22 dpp
45 dpp
90 dpp
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Start codon: |
124780549 |
Stop codon: |
124783156 |
Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
124780019, 124783293, 124783393, 124783545, 124783718 |
polyA signals: |
AATGAA, multi, none, CATAAA, none |
Tips for marking poly(A) sites in the corresponding genome sequence:
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All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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> uc009dsc.2; Cdca3, cell division cycle-associated protein 3 |
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in up_1kb |
Start | StartCodon | StopCodon |
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
End |
PolyA
sites and polyA signals mapped to the searched transcript,
including the 5' and 3' flanking region of 1kb |
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PolyA sites used during the thymic development of mouse (Mus.musculus) from 13.5 dpf to 90 dpp. hpf, hours post fertilization. dpp, days post parturition.
Reads bar break at 100 reads. Mean reads: 680. |
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Start codon: |
124780549 |
Stop codon: |
124783156 |
Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
124780019, 124783293, 124783393, 124783545, 124783718 |
polyA signals: |
AATGAA, multi, none, CATAAA, none |
Tips for marking poly(A) sites in the corresponding genome sequence:
|
All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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