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 Pooled
 MCF10A
MCF7
MB231
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| Gene id: |
uc003qht.2 |
| Gene name: |
PERP |
| Chromosome: |
chr6(-) |
| Gene locus: |
chr6:138409641-138428660 |
| Gene description: |
Homo sapiens PERP, TP53 apoptosis effector (PERP), mRNA. |
| Notes: |
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| Start codon: |
138428475 |
| Stop codon: |
138413179 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
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138413054, 138412261, 138411928, 138409645 |
| polyA signals: |
ATTAAA, AATAAA, AATAAA, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
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All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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> uc003qht.2; PERP, Homo sapiens PERP, TP53 apoptosis effector (PERP), mRNA.
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End | 
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
StopCodon | StartCodon | Start | |
| PolyA
sites and polyA signals mapped to the searched transcript,
including the 5' and 3' flanking region of 1kb |
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| PolyA sites produced by APA among human breast cancer and normal cells. MCF7 and MB231, two human breast cancer cell lines, and MCF10A, one cultured mammary epithelial cell line.
Reads bar break at 100 reads. Mean reads: 1206. |
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| Gene id: |
uc003qht.2 |
| Gene name: |
PERP |
| Chromosome: |
chr6(-) |
| Gene locus: |
chr6:138409641-138428660 |
| Gene description: |
Homo sapiens PERP, TP53 apoptosis effector (PERP), mRNA. |
| Notes: |
|
| Start codon: |
138428475 |
| Stop codon: |
138413179 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
|
138413054, 138412261, 138411928, 138409645 |
| polyA signals: |
ATTAAA, AATAAA, AATAAA, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
|
|
All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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