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 Pooled
 0 hpf
4 hpf
6 hpf
12 hpf
24 hpf (1 dpf)
48 hpf (2 dpf)
72 hpf (3 dpf)
120 hpf (5 dpf)
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| Gene id: |
ENSDARG00000037116 |
| Gene name: |
cxcl12a |
| Chromosome: |
chr13(+) |
| Gene locus: |
13:31027968-31043317 |
| Gene description: |
chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN |
| Notes: |
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| Start codon: |
31028066 |
| Stop codon: |
31040671 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
|
31040950, 31041075, 31041303, 31042052, 31042222, 31042612, 31043309, 31043625 |
| polyA signals: |
AGTAAA, AATAAA, none, ATTAAA, AATACA, AATAAA, AATAAA, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
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All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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> ENSDARG00000037116; ENSDART00000053946; cxcl12a, chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030318-1]
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Start | StartCodon | StopCodon | 
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
in 3'UTR |
End |
in down_1kb |
| PolyA
sites and polyA signals mapped to the searched transcript,
including the 5' and 3' flanking region of 1kb |
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| PolyA sites used in the embryonic development of zebrafish (Tubingen, Danio rerio) from 0 to 120 hpf. hpf, hours post fertilizaiton. dpf, days post fertilizaiton.
Mean reads: 67. |
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| Gene id: |
ENSDARG00000037116 |
| Gene name: |
cxcl12a |
| Chromosome: |
chr13(+) |
| Gene locus: |
13:31027968-31043317 |
| Gene description: |
chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN |
| Notes: |
|
| Start codon: |
31028066 |
| Stop codon: |
31040671 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
|
31040950, 31041075, 31041303, 31042052, 31042222, 31042612, 31043309, 31043625 |
| polyA signals: |
AGTAAA, AATAAA, none, ATTAAA, AATACA, AATAAA, AATAAA, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
|
|
All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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