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Analysis of genomic poly(A) sites
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 Searching APA sites in 3'UTR of a interesting gene  [Help]  
Danio rerio
 Database: for
 Dataset description: Detailed description on the searching dataset can be referred by unfolding more description in the dataset-list page 'APAS Search'.
 Tips for searching:
search using a ID (currently Ensembl or UCSC ID only), gene name, symbols or description variable in publications and databases.
 Searching examples: cxcl12a, cxcl, chemokine, also ENSDARG00000037116 (Ensembl id only for Danio rerio), uc009dsc.2, uc003qht.2 (UCSC id only for Mus musculus and Homo sapiens).

APA sites (APAS)-containg genes matched keywords: 'cxcl'   total : 3/7     *click 'Uview'-labled button to detail APA sites in a new page [Help]  

 APA sites*   id   gene_id/transcript_id (Link other resources)   gene name   locus (link view in Gbrowse)   descriptions & notes 
2 1   ENSDARG00000056627;ENSDART00000125923   cxcl14   chr14(-):25400463-25410337 chemokine (C-X-C motif) ligand 14 [Source:ZFIN;Acc:ZDB-GENE-000619-1 ]
1 2   ENSDARG00000055100;ENSDART00000077411   cxcl12b   chr22(-):27551657-27567596 chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1 ]
8 3   ENSDARG00000037116;ENSDART00000053946   cxcl12a   chr13(+):31027969-31043317 chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030318-1 ]
*click 'Uview'-labled button to detail APA sites in a new page. poly(A) sites map to a full transcript, containing the 5' and 3' flanking region of 1kb. clicking '+' icon quickly overviews the APA-sites mapping.

(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

Jan 11, 2021. Last updated  
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