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Analysis of genomic poly(A) sites
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 Searching APA sites in 3'UTR of a interesting gene  [Help]  
Danio rerio
 Database: for
 Dataset description: Detailed description on the searching dataset can be referred by unfolding more description in the dataset-list page 'APAS Search'.
 Tips for searching:
search using a ID (currently Ensembl or UCSC ID only), gene name, symbols or description variable in publications and databases.
 Searching examples: cxcl12a, cxcl, chemokine, also ENSDARG00000037116 (Ensembl id only for Danio rerio), uc009dsc.2, uc003qht.2 (UCSC id only for Mus musculus and Homo sapiens).

APA sites (APAS)-containg genes matched keywords: 'chemokine'   total : 26/65     *click 'Uview'-labled button to detail APA sites in a new page [Help]  

 APA sites*   id   gene_id/transcript_id (Link other resources)   gene name   locus (link view in Gbrowse)   descriptions & notes 
2 1   ENSDARG00000040133;ENSDART00000058703   ccrl1b   chr24(+):11153630-11162899 chemokine (C-C motif) receptor-like 1b [Source:ZFIN;Acc:ZDB-GENE-051107-10 ]
1 2   ENSDARG00000078729;ENSDART00000145446   ccrl1a   chr2(+):31387267-31390125 chemokine (C-C motif) receptor-like 1a [Source:ZFIN;Acc:ZDB-GENE-070301-6 ]
1 3   ENSDARG00000078729;ENSDART00000111070   ccrl1a   chr2(+):31387229-31390125 chemokine (C-C motif) receptor-like 1a [Source:ZFIN;Acc:ZDB-GENE-070301-6 ]
3 4   ENSDARG00000062471;ENSDART00000090401   FAM19A4   chr11(-):18096509-18213516 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 [Source:HGNC Symbol;Acc:21591]
1 5   ENSDARG00000070873;ENSDART00000104405   ccl25b   chr11(-):6296249-6300131 chemokine (C-C motif) ligand 25b [Source:ZFIN;Acc:ZDB-GENE-110222-2 ]
1 6   ENSDARG00000074772;ENSDART00000109972   BX248501.1   chr11(-):6217610-6222939 chemokine CCL-C11b precursor [Source:RefSeq peptide;Acc:NP_001108574]
1 7   ENSDARG00000090890;ENSDART00000130911   cmklr1   chr5(+):22372800-22374123 chemokine-like receptor 1 [Source:ZFIN;Acc:ZDB-GENE-060526-126 ]
1 8   ENSDARG00000090890;ENSDART00000137019   cmklr1   chr5(+):22353901-22373896 chemokine-like receptor 1 [Source:ZFIN;Acc:ZDB-GENE-060526-126 ]
1 9   ENSDARG00000058389;ENSDART00000099611   si:ch211-89f7.4   chr5(+):14556212-14594925 chemokine CCL-C5a [Source:ZFIN;Acc:ZDB-GENE-060526-181 ]
3 10   ENSDARG00000087474;ENSDART00000122256   ccr6a   chr20(+):30636455-30640427 chemokine (C-C motif) receptor 6a [Source:ZFIN;Acc:ZDB-GENE-040625-126 ]
2 11   ENSDARG00000056627;ENSDART00000125923   cxcl14   chr14(-):25400463-25410337 chemokine (C-X-C motif) ligand 14 [Source:ZFIN;Acc:ZDB-GENE-000619-1 ]
1 12   ENSDARG00000007358;ENSDART00000028141   cxcr3.1   chr16(-):13603464-13609316 chemokine (C-X-C motif) receptor 3.1 [Source:ZFIN;Acc:ZDB-GENE-060130-38 ]
1 13   ENSDARG00000007358;ENSDART00000145754   cxcr3.1   chr16(-):13603464-13609316 chemokine (C-X-C motif) receptor 3.1 [Source:ZFIN;Acc:ZDB-GENE-060130-38 ]
3 14   ENSDARG00000058179;ENSDART00000063665   cxcr7b   chr6(-):15651810-15657695 chemokine (C-X-C motif) receptor 7b [Source:ZFIN;Acc:ZDB-GENE-031116-61 ]
1 15   ENSDARG00000057633;ENSDART00000149018   cxcr4a   chr6(+):12834038-12835264 chemokine (C-X-C motif) receptor 4a [Source:ZFIN;Acc:ZDB-GENE-020102-1 ]
1 16   ENSDARG00000057633;ENSDART00000080350   cxcr4a   chr6(+):12833922-12835647 chemokine (C-X-C motif) receptor 4a [Source:ZFIN;Acc:ZDB-GENE-020102-1 ]
1 17   ENSDARG00000055100;ENSDART00000077411   cxcl12b   chr22(-):27551657-27567596 chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1 ]
1 18   ENSDARG00000062478;ENSDART00000101588   CXCR7(2of2)   chr9(-):25078050-25079632 chemokine (C-X-C motif) receptor 7 [Source:HGNC Symbol;Acc:23692]
1 19   ENSDARG00000062478;ENSDART00000090414   CXCR7(2of2)   chr9(-):25077194-25083617 chemokine (C-X-C motif) receptor 7 [Source:HGNC Symbol;Acc:23692]
8 20   ENSDARG00000037116;ENSDART00000053946   cxcl12a   chr13(+):31027969-31043317 chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030318-1 ]
3 21   ENSDARG00000041959;ENSDART00000061499   cxcr4b   chr9(+):10917685-10919710 chemokine (C-X-C motif), receptor 4b [Source:ZFIN;Acc:ZDB-GENE-010614-1 ]
3 22   ENSDARG00000054846;ENSDART00000077122   XCR1(3of4)   chr23(-):40247743-40248642 chemokine (C motif) receptor 1 [Source:HGNC Symbol;Acc:1625]
1 23   ENSDARG00000058570;ENSDART00000081457   ccl1   chr8(+):1238684-1252615 CC chemokine 1 [Source:ZFIN;Acc:ZDB-GENE-000208-28 ]
2 24   ENSDARG00000069160;ENSDART00000145806   fam19a5   chr4(-):26549511-26647211 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 [Source:ZFIN;Acc:ZDB-GENE-041210-344 ]
2 25   ENSDARG00000069160;ENSDART00000142117   fam19a5   chr4(-):26549370-26694722 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 [Source:ZFIN;Acc:ZDB-GENE-041210-344 ]
3 26   ENSDARG00000069160;ENSDART00000139095   fam19a5   chr4(-):26548795-26561546 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 [Source:ZFIN;Acc:ZDB-GENE-041210-344 ]
*click 'Uview'-labled button to detail APA sites in a new page. poly(A) sites map to a full transcript, containing the 5' and 3' flanking region of 1kb. clicking '+' icon quickly overviews the APA-sites mapping.

(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

Jan 11, 2021. Last updated  
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