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 Pooled
 Normal intestine
V.anguillarum-infected intestine
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| Gene id: |
Bb_111540F |
| Gene name: |
casp9 |
| Chromosome: |
Sc0000065(+) |
| Gene locus: |
Sc0000065:151091-167736 |
| Gene description: |
caspase 9, apoptosis-related cysteine protease |
| Notes: |
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| Start codon: |
151091 |
| Stop codon: |
167734 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
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150459, 162206, 164180 |
| polyA signals: |
AATAAA, none, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
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All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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> Bb_111540F; casp9, caspase 9, apoptosis-related cysteine protease
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in up_1kb |
Start | Start |
in intron |
in intron |
StopCodon | End |
| PolyA
sites and polyA signals mapped to the searched transcript,
including the 5' and 3' flanking region of 1kb |
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| V.anguillarum-infected intestine |
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| PolyA sites produced by APA in Vibrio anguillarum-infected intestine and normal control. Vibrio anguillarum (V.anguillarum), a severe pathogen of marine fish.
Mean reads: 34. |
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| Gene id: |
Bb_111540F |
| Gene name: |
casp9 |
| Chromosome: |
Sc0000065(+) |
| Gene locus: |
Sc0000065:151091-167736 |
| Gene description: |
caspase 9, apoptosis-related cysteine protease |
| Notes: |
|
| Start codon: |
151091 |
| Stop codon: |
167734 |
| Alternative polyA sites: |
Mapped to the searched transcript,
containing the 5' and 3' flanking region of 1kb. |
|
150459, 162206, 164180 |
| polyA signals: |
AATAAA, none, AATAAA |
Tips for marking poly(A) sites in the corresponding genome sequence:
|
|
All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green.
Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold.
Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
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