Home APASdb Home APAS Search APAS Browse BLAST Download Contact Us Help Citation
Analysis of genomic poly(A) sites
  Search For [ Example ] [ Tips ]
 Searching APA sites in 3'UTR of a interesting gene  [Help]  
 
Zebrafish
Danio rerio
 Database: for
 Dataset description: Detailed description on the searching dataset can be referred by unfolding more description in the dataset-list page 'APAS Search'.
 Tips for searching:
search using a ID (currently Ensembl or UCSC ID only), gene name, symbols or description variable in publications and databases.
 Searching examples: cxcl12a, cxcl, chemokine, also ENSDARG00000037116 (Ensembl id only for Danio rerio), uc009dsc.2, uc003qht.2 (UCSC id only for Mus musculus and Homo sapiens).
 
 
 1. Poly(A)-site map Poly(A)-site usage Heterogeneous cleavage-site selection [Help]   
   
  Pooled
  0 hpf
   4 hpf
   6 hpf
   12 hpf
   24 hpf (1 dpf)
   48 hpf (2 dpf)
   72 hpf (3 dpf)
   120 hpf (5 dpf)
Gene id: ENSDARG00000090890 
Gene name: cmklr1
Chromosome: chr16(+)
Gene locus: 5:22353900-22374123
Gene description: chemokine-like receptor 1 [Source:ZFIN
Notes:

Transcript id: ENSDART00000130911 
Transcript name: cmklr1-201
Transcript locus: chr5(+):22372800-22374123

Start codon: 22372835
Stop codon: 22373894
Alternative polyA sites: Mapped to the searched transcript, containing the 5' and 3' flanking region of 1kb.
22392153, 22392336, 22392453, 22392981, 22393099, 22393240, 22393455, 22394915, 22395564, 22397061, 22397438, 22587185, 22587282, 22604862, 22605376, 22779890, 22779947, 22781734, 22885933, 22886053, 22888748, 22965536, 22971859, 22973139, 22973533, 22973643, 22973749, 22973939, 22974191, 22974276, 22974334, 22980726, 22981989, 22982267, 22991805, 22992092, 22997201, 22997429, 23002012, 23013492, 23013614, 23019732, 23062133, 23133333, 23143201, 23502829, 23518992, 23525382, 23525407, 23525542, 23528310, 23529045, 23803199, 23820638, 23820924, 23821275, 23821801, 23822439, 23822571, 23823122, 23922571, 23922764, 23933219, 23935246, 23936268, 23990983, 24129092, 24130814, 24131056, 24234533, 24288637, 24333755, 24541868, 24541963, 24543030, 24543115, 24759619, 24786975, 24833416, 24857788, 24858030, 25056402, 25059485, 25059547, 25059701, 25059741, 25059813, 25430989, 25431351, 25432717, 25432945, 25524215, 25527227, 25537431, 25554135, 25554491, 25554602, 25554640, 25554707, 25554753, 25554837, 25554900, 25555067, 25555522, 25555589, 25555622, 25556036, 25556591, 25557263, 25557478, 25558440, 25558592, 25558750, 25559179, 25627909, 25638318, 25638421, 25638575, 25638772, 25639359, 25640135, 25644637, 25671768, 25671841, 25730376, 25730812, 25730948, 25735645, 25736076, 25736741, 25736949, 25763948, 25764029, 25764202, 25764693, 25764860, 25765027, 25765327, 25766978, 25776205, 25776355, 25777914, 25778363, 25796110, 25796237, 25796304, 25796440, 25796564, 25796888, 25797002, 25797286, 25797532, 25797627, 25797749, 25797883, 25798232, 25798373, 25798412, 25798832, 25857624, 25958938, 26002291, 26045191, 26048671, 26048767, 26048806, 26048899, 26074684, 26075213, 26103698, 26103934, 26114651, 26114711, 26114762, 26115049, 26115785, 26115846, 26131955, 26140926, 26140972, 26141042, 26141423, 26141580, 26141730, 26141851, 26141939, 26143414, 26143576, 26143732, 26154917, 26155125, 26155187, 26155268, 26158679, 26162254, 26164076, 26167541, 26187823, 26187917, 26200936, 26202306, 26202394, 26202607, 26202750, 26202886, 26203874, 26212501, 26212783, 26212885, 26213006, 26213728, 26216411, 26219010, 26219087, 26219495, 26219646, 26219810, 26230388, 26230448, 26230500, 26230758, 26230802, 26233379, 26233532, 26348242, 26448647, 26764135, 26885874, 26886040, 26888448, 26923640, 26932000, 26934570, 26934737, 26934869, 26935180, 26936333, 26962906, 26963272, 26972438, 26972612, 26973027, 26980697, 26981107, 26981208, 26981332, 26981428, 26981618, 27027700, 27115424, 27124936, 27137622, 27137971
polyA signals: AATAAA, AATAAA, ACTAAA, AATAGA, none, none, AATAAA, AATAAA, none, AATAAA, CATAAA, none, none, ATTAAA, AATAAA, AATAAA, AATAAA, AATAAA, AATAAA, AATAAA, ATTAAA, AATAAA, ATTAAA, AATAAA, AATGAA, ACTAAA, ATTAAA, ATTAAA, AATAAA, AATAAA, ATTAAA, none, AGTAAA, AATAAA, TATAAA, multi, none, AATAAA, AATAAA, AATAAA, ATTAAA, AAGAAA, multi, AATAAA, AATAAA, AATAAA, none, none, none, AATAAA, AATACA, AATAAA, AATAAA, none, TATAAA, AATAAA, none, none, AATAAA, TATAAA, AATGAA, AATAAA, AATAAA, ATTAAA, AATAAA, AATAAA, none, AATAAA, ATTAAA, AATAAA, AATAAA, AATAAA, CATAAA, multi, TATAAA, ATTAAA, AATAAA, AATAAA, none, AATAAA, AATAAA, AATAAA, ATTAAA, none, AATAAA, AATGAA, none, AATAAA, ATTAAA, AATAAA, none, ATTAAA, AATAAA, AATAAA, none, AGTAAA, none, none, none, none, none, multi, AGTAAA, ACTAAA, none, none, GATAAA, GATAAA, TATAAA, none, multi, AATAAA, none, none, ATTAAA, AATAAA, none, AATAAA, none, AATAAA, AATAAA, AATAAA, none, multi, AATAAA, AATATA, GATAAA, AATACA, GATAAA, none, ATTAAA, none, ACTAAA, ATTAAA, AATAAA, none, TATAAA, AATACA, AATAAA, none, none, none, none, AGTAAA, AATGAA, AATAAA, AATGAA, AATATA, AATAAA, ATTAAA, TATAAA, none, ACTAAA, ATTAAA, AGTAAA, AATAAA, AATAAA, AGTAAA, AATAAA, AATAAA, AATAAA, AATAAA, AATAAA, ATTAAA, none, none, AATAAA, AATAAA, AATAAA, AATAGA, AATAAA, multi, multi, ATTAAA, AATAAA, none, AATAAA, none, ATTAAA, AATAGA, ATTAAA, AATACA, none, AGTAAA, multi, AGTAAA, TATAAA, CATAAA, AATATA, ATTAAA, AATACA, none, multi, AATAAA, AATAAA, TATAAA, none, AATAAA, AATAAA, none, none, GATAAA, AATAAA, multi, multi, AATAAA, none, ATTAAA, AATACA, multi, AATAAA, AATAAA, none, none, none, multi, ATTAAA, AATAAA, AATAAA, AATATA, AATACA, AATAAA, AATAAA, AATAAA, AATAAA, multi, TATAAA, AATAAA, AATAAA, TATAAA, none, none, ATTAAA, AAGAAA, none, multi, AATAAA, ATTAAA, AATAAA, TATAAA, multi, CATAAA, AATAAA, multi, ATTAAA, AATAAA, AGTAAA, AATAAA, ATTAAA, none, none, TATAAA, AATAAA

 Tips for marking poly(A) sites in the corresponding genome sequence:
All the heterogeneous cleavage sites clustered to a poly(A) site, are underlined and highlighted in light red, and their upstream poly(A) signals if exists, are highlighted in light green. Especially, the most-frequently used cleavage site defined as the reference poly(A) site in a cluster, is specially highlighted in dark red and underlined in bold. Also, the searched transcript locus is indicated, including the marked exons (light grey background with a brown font), introns and UTRs (light grey background with a green font).
 

ENSDARG00000090890; ENSDART00000130911; cmklr1, chemokine-like receptor 1 [Source:ZFIN;Acc:ZDB-GENE-060526-126]
 
 
 
 
chr16:(+)
cmklr1
  
 Transcript   
 22372800   
 Codon   
 22372835   
 Codon   
 22373894   
 Transcript   
 22374123   
656(0.3%)
 
signal:AATAAA
 pA:22392153    
11(0%)
 
signal:AATAAA
 pA:22392336    
12(0%)
 
signal:ACTAAA
 pA:22392453    
15(0%)
 
signal:AATAGA
 pA:22392981    
37(0%)
 
signal:none
 pA:22393099    
15(0%)
 
signal:none
 pA:22393240    
112(0.1%)
 
signal:AATAAA
 pA:22393455    
40(0%)
 
signal:AATAAA
 pA:22394915    
26(0%)
 
signal:none
 pA:22395564    
222(0.1%)
 
signal:AATAAA
 pA:22397061    
6(0%)
 
signal:CATAAA
 pA:22397438    
8(0%)
 
signal:none
 pA:22587185    
5(0%)
 
signal:none
 pA:22587282    
516(0.2%)
 
signal:ATTAAA
 pA:22604862    
5(0%)
 
signal:AATAAA
 pA:22605376    
12(0%)
 
signal:AATAAA
 pA:22779890    
18(0%)
 
signal:AATAAA
 pA:22779947    
8(0%)
 
signal:AATAAA
 pA:22781734    
6(0%)
 
signal:AATAAA
 pA:22885933    
11(0%)
 
signal:AATAAA
 pA:22886053    
248(0.1%)
 
signal:ATTAAA
 pA:22888748    
26(0%)
 
signal:AATAAA
 pA:22965536    
28(0%)
 
signal:ATTAAA
 pA:22971859    
7(0%)
 
signal:AATAAA
 pA:22973139    
23(0%)
 
signal:AATGAA
 pA:22973533    
19(0%)
 
signal:ACTAAA
 pA:22973643    
739(0.3%)
 
signal:ATTAAA
 pA:22973749    
231(0.1%)
 
signal:ATTAAA
 pA:22973939    
132(0.1%)
 
signal:AATAAA
 pA:22974191    
7(0%)
 
signal:AATAAA
 pA:22974276    
18(0%)
 
signal:ATTAAA
 pA:22974334    
6(0%)
 
signal:none
 pA:22980726    
15(0%)
 
signal:AGTAAA
 pA:22981989    
8(0%)
 
signal:AATAAA
 pA:22982267    
39(0%)
 
signal:TATAAA
 pA:22991805    
8(0%)
 
signal:multi
 pA:22992092    
29(0%)
 
signal:none
 pA:22997201    
107(0%)
 
signal:AATAAA
 pA:22997429    
91(0%)
 
signal:AATAAA
 pA:23002012    
166(0.1%)
 
signal:AATAAA
 pA:23013492    
14(0%)
 
signal:ATTAAA
 pA:23013614    
5(0%)
 
signal:AAGAAA
 pA:23019732    
73(0%)
 
signal:multi
 pA:23062133    
6(0%)
 
signal:AATAAA
 pA:23133333    
7(0%)
 
signal:AATAAA
 pA:23143201    
15(0%)
 
signal:AATAAA
 pA:23502829    
5(0%)
 
signal:none
 pA:23518992    
9(0%)
 
signal:none
 pA:23525382    
10(0%)
 
signal:none
 pA:23525407    
20(0%)
 
signal:AATAAA
 pA:23525542    
5(0%)
 
signal:AATACA
 pA:23528310    
5(0%)
 
signal:AATAAA
 pA:23529045    
6(0%)
 
signal:AATAAA
 pA:23803199    
8(0%)
 
signal:none
 pA:23820638    
138(0.1%)
 
signal:TATAAA
 pA:23820924    
16(0%)
 
signal:AATAAA
 pA:23821275    
13(0%)
 
signal:none
 pA:23821801    
8(0%)
 
signal:none
 pA:23822439    
388(0.2%)
 
signal:AATAAA
 pA:23822571    
6(0%)
 
signal:TATAAA
 pA:23823122    
6(0%)
 
signal:AATGAA
 pA:23922571    
1096(0.5%)
 
signal:AATAAA
 pA:23922764    
6(0%)
 
signal:AATAAA
 pA:23933219    
5(0%)
 
signal:ATTAAA
 pA:23935246    
145(0.1%)
 
signal:AATAAA
 pA:23936268    
8(0%)
 
signal:AATAAA
 pA:23990983    
6(0%)
 
signal:none
 pA:24129092    
18(0%)
 
signal:AATAAA
 pA:24130814    
207(0.1%)
 
signal:ATTAAA
 pA:24131056    
12(0%)
 
signal:AATAAA
 pA:24234533    
13(0%)
 
signal:AATAAA
 pA:24288637    
5(0%)
 
signal:AATAAA
 pA:24333755    
7(0%)
 
signal:CATAAA
 pA:24541868    
21(0%)
 
signal:multi
 pA:24541963    
674(0.3%)
 
signal:TATAAA
 pA:24543030    
495(0.2%)
 
signal:ATTAAA
 pA:24543115    
5(0%)
 
signal:AATAAA
 pA:24759619    
260(0.1%)
 
signal:AATAAA
 pA:24786975    
6(0%)
 
signal:none
 pA:24833416    
19(0%)
 
signal:AATAAA
 pA:24857788    
38(0%)
 
signal:AATAAA
 pA:24858030    
7(0%)
 
signal:AATAAA
 pA:25056402    
990(0.5%)
 
signal:ATTAAA
 pA:25059485    
12(0%)
 
signal:none
 pA:25059547    
65(0%)
 
signal:AATAAA
 pA:25059701    
13(0%)
 
signal:AATGAA
 pA:25059741    
6(0%)
 
signal:none
 pA:25059813    
22(0%)
 
signal:AATAAA
 pA:25430989    
8(0%)
 
signal:ATTAAA
 pA:25431351    
170(0.1%)
 
signal:AATAAA
 pA:25432717    
88(0%)
 
signal:none
 pA:25432945    
11(0%)
 
signal:ATTAAA
 pA:25524215    
5(0%)
 
signal:AATAAA
 pA:25527227    
110(0.1%)
 
signal:AATAAA
 pA:25537431    
5(0%)
 
signal:none
 pA:25554135    
18(0%)
 
signal:AGTAAA
 pA:25554491    
10(0%)
 
signal:none
 pA:25554602    
21(0%)
 
signal:none
 pA:25554640    
25(0%)
 
signal:none
 pA:25554707    
6(0%)
 
signal:none
 pA:25554753    
19(0%)
 
signal:none
 pA:25554837    
18(0%)
 
signal:multi
 pA:25554900    
7(0%)
 
signal:AGTAAA
 pA:25555067    
10(0%)
 
signal:ACTAAA
 pA:25555522    
6(0%)
 
signal:none
 pA:25555589    
5(0%)
 
signal:none
 pA:25555622    
8(0%)
 
signal:GATAAA
 pA:25556036    
11(0%)
 
signal:GATAAA
 pA:25556591    
7(0%)
 
signal:TATAAA
 pA:25557263    
8(0%)
 
signal:none
 pA:25557478    
76(0%)
 
signal:multi
 pA:25558440    
65(0%)
 
signal:AATAAA
 pA:25558592    
6(0%)
 
signal:none
 pA:25558750    
11(0%)
 
signal:none
 pA:25559179    
1629(0.7%)
 
signal:ATTAAA
 pA:25627909    
78(0%)
 
signal:AATAAA
 pA:25638318    
11(0%)
 
signal:none
 pA:25638421    
221(0.1%)
 
signal:AATAAA
 pA:25638575    
189(0.1%)
 
signal:none
 pA:25638772    
15(0%)
 
signal:AATAAA
 pA:25639359    
12(0%)
 
signal:AATAAA
 pA:25640135    
217(0.1%)
 
signal:AATAAA
 pA:25644637    
220(0.1%)
 
signal:none
 pA:25671768    
30218(13.9%)
 
signal:multi
 pA:25671841    
9888(4.5%)
 
signal:AATAAA
 pA:25730376    
85(0%)
 
signal:AATATA
 pA:25730812    
21(0%)
 
signal:GATAAA
 pA:25730948    
12(0%)
 
signal:AATACA
 pA:25735645    
224(0.1%)
 
signal:GATAAA
 pA:25736076    
6(0%)
 
signal:none
 pA:25736741    
8(0%)
 
signal:ATTAAA
 pA:25736949    
11(0%)
 
signal:none
 pA:25763948    
8(0%)
 
signal:ACTAAA
 pA:25764029    
269(0.1%)
 
signal:ATTAAA
 pA:25764202    
100(0%)
 
signal:AATAAA
 pA:25764693    
5(0%)
 
signal:none
 pA:25764860    
14(0%)
 
signal:TATAAA
 pA:25765027    
6(0%)
 
signal:AATACA
 pA:25765327    
432(0.2%)
 
signal:AATAAA
 pA:25766978    
5(0%)
 
signal:none
 pA:25776205    
8(0%)
 
signal:none
 pA:25776355    
5(0%)
 
signal:none
 pA:25777914    
5(0%)
 
signal:none
 pA:25778363    
13(0%)
 
signal:AGTAAA
 pA:25796110    
37(0%)
 
signal:AATGAA
 pA:25796237    
992(0.5%)
 
signal:AATAAA
 pA:25796304    
67(0%)
 
signal:AATGAA
 pA:25796440    
87(0%)
 
signal:AATATA
 pA:25796564    
8(0%)
 
signal:AATAAA
 pA:25796888    
83(0%)
 
signal:ATTAAA
 pA:25797002    
9(0%)
 
signal:TATAAA
 pA:25797286    
8(0%)
 
signal:none
 pA:25797532    
16(0%)
 
signal:ACTAAA
 pA:25797627    
118(0.1%)
 
signal:ATTAAA
 pA:25797749    
5(0%)
 
signal:AGTAAA
 pA:25797883    
156(0.1%)
 
signal:AATAAA
 pA:25798232    
13(0%)
 
signal:AATAAA
 pA:25798373    
18(0%)
 
signal:AGTAAA
 pA:25798412    
34(0%)
 
signal:AATAAA
 pA:25798832    
5(0%)
 
signal:AATAAA
 pA:25857624    
9(0%)
 
signal:AATAAA
 pA:25958938    
15(0%)
 
signal:AATAAA
 pA:26002291    
19(0%)
 
signal:AATAAA
 pA:26045191    
15(0%)
 
signal:ATTAAA
 pA:26048671    
11(0%)
 
signal:none
 pA:26048767    
5(0%)
 
signal:none
 pA:26048806    
597(0.3%)
 
signal:AATAAA
 pA:26048899    
38(0%)
 
signal:AATAAA
 pA:26074684    
15(0%)
 
signal:AATAAA
 pA:26075213    
5(0%)
 
signal:AATAGA
 pA:26103698    
8(0%)
 
signal:AATAAA
 pA:26103934    
16(0%)
 
signal:multi
 pA:26114651    
144(0.1%)
 
signal:multi
 pA:26114711    
19(0%)
 
signal:ATTAAA
 pA:26114762    
6(0%)
 
signal:AATAAA
 pA:26115049    
14(0%)
 
signal:none
 pA:26115785    
162(0.1%)
 
signal:AATAAA
 pA:26115846    
5(0%)
 
signal:none
 pA:26131955    
17(0%)
 
signal:ATTAAA
 pA:26140926    
28(0%)
 
signal:AATAGA
 pA:26140972    
166(0.1%)
 
signal:ATTAAA
 pA:26141042    
10(0%)
 
signal:AATACA
 pA:26141423    
7(0%)
 
signal:none
 pA:26141580    
31(0%)
 
signal:AGTAAA
 pA:26141730    
31(0%)
 
signal:multi
 pA:26141851    
52(0%)
 
signal:AGTAAA
 pA:26141939    
6(0%)
 
signal:TATAAA
 pA:26143414    
63(0%)
 
signal:CATAAA
 pA:26143576    
10(0%)
 
signal:AATATA
 pA:26143732    
72(0%)
 
signal:ATTAAA
 pA:26154917    
5(0%)
 
signal:AATACA
 pA:26155125    
5(0%)
 
signal:none
 pA:26155187    
2368(1.1%)
 
signal:multi
 pA:26155268    
7(0%)
 
signal:AATAAA
 pA:26158679    
33(0%)
 
signal:AATAAA
 pA:26162254    
11(0%)
 
signal:TATAAA
 pA:26164076    
32(0%)
 
signal:none
 pA:26167541    
1397(0.6%)
 
signal:AATAAA
 pA:26187823    
32(0%)
 
signal:AATAAA
 pA:26187917    
7(0%)
 
signal:none
 pA:26200936    
379(0.2%)
 
signal:none
 pA:26202306    
24(0%)
 
signal:GATAAA
 pA:26202394    
19(0%)
 
signal:AATAAA
 pA:26202607    
67937(31.2%)
 
signal:multi
 pA:26202750    
679(0.3%)
 
signal:multi
 pA:26202886    
21(0%)
 
signal:AATAAA
 pA:26203874    
12(0%)
 
signal:none
 pA:26212501    
15(0%)
 
signal:ATTAAA
 pA:26212783    
133(0.1%)
 
signal:AATACA
 pA:26212885    
8767(4%)
 
signal:multi
 pA:26213006    
6(0%)
 
signal:AATAAA
 pA:26213728    
8(0%)
 
signal:AATAAA
 pA:26216411    
122(0.1%)
 
signal:none
 pA:26219010    
8(0%)
 
signal:none
 pA:26219087    
32(0%)
 
signal:none
 pA:26219495    
44326(20.4%)
 
signal:multi
 pA:26219646    
16(0%)
 
signal:ATTAAA
 pA:26219810    
2040(0.9%)
 
signal:AATAAA
 pA:26230388    
5237(2.4%)
 
signal:AATAAA
 pA:26230448    
17(0%)
 
signal:AATATA
 pA:26230500    
5(0%)
 
signal:AATACA
 pA:26230758    
7(0%)
 
signal:AATAAA
 pA:26230802    
6(0%)
 
signal:AATAAA
 pA:26233379    
25(0%)
 
signal:AATAAA
 pA:26233532    
12(0%)
 
signal:AATAAA
 pA:26348242    
9(0%)
 
signal:multi
 pA:26448647    
5(0%)
 
signal:TATAAA
 pA:26764135    
43(0%)
 
signal:AATAAA
 pA:26885874    
35(0%)
 
signal:AATAAA
 pA:26886040    
5(0%)
 
signal:TATAAA
 pA:26888448    
163(0.1%)
 
signal:none
 pA:26923640    
7(0%)
 
signal:none
 pA:26932000    
58(0%)
 
signal:ATTAAA
 pA:26934570    
463(0.2%)
 
signal:AAGAAA
 pA:26934737    
10(0%)
 
signal:none
 pA:26934869    
25283(11.6%)
 
signal:multi
 pA:26935180    
6(0%)
 
signal:AATAAA
 pA:26936333    
16(0%)
 
signal:ATTAAA
 pA:26962906    
5(0%)
 
signal:AATAAA
 pA:26963272    
167(0.1%)
 
signal:TATAAA
 pA:26972438    
689(0.3%)
 
signal:multi
 pA:26972612    
27(0%)
 
signal:CATAAA
 pA:26973027    
36(0%)
 
signal:AATAAA
 pA:26980697    
40(0%)
 
signal:multi
 pA:26981107    
9(0%)
 
signal:ATTAAA
 pA:26981208    
5(0%)
 
signal:AATAAA
 pA:26981332    
10(0%)
 
signal:AGTAAA
 pA:26981428    
48(0%)
 
signal:AATAAA
 pA:26981618    
6(0%)
 
signal:ATTAAA
 pA:27027700    
10(0%)
 
signal:none
 pA:27115424    
5(0%)
 
signal:none
 pA:27124936    
22(0%)
 
signal:TATAAA
 pA:27137622    
5(0%)
 
signal:AATAAA
 pA:27137971    
    Start StartCodon StopCodon End in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb in out_1kb
PolyA sites and polyA signals mapped to the searched transcript, including the 5' and 3' flanking region of 1kb
 
 
 
205
6
2
0
0
0
0
0
0
0
0
8
4
212
0
2
9
0
5
4
1
6
8
0
0
1
135
32
2
0
0
0
0
0
0
0
0
1
1
0
0
4
25
0
0
0
0
0
8
0
0
0
0
8
7
4
0
0
60
0
3
68
0
0
0
0
4
10
145
0
3
0
0
7
328
229
0
0
0
0
0
7
128
0
12
13
1
0
0
0
0
0
0
0
2
5
10
8
18
4
3
4
2
2
6
5
6
11
1
2
33
12
6
0
378
0
0
0
0
0
0
0
1
6
1
0
0
1
22
0
0
7
3
202
60
3
6
6
35
0
0
1
0
6
8
254
24
42
1
29
0
1
0
30
0
31
0
4
2
0
0
0
5
0
7
0
269
0
0
0
8
1
6
1
0
8
4
1
1
0
34
2
7
4
17
4
0
0
1
0
0
0
2
0
0
0
0
0
0
0
1
0
0
48
0
0
0
0
0
14
0
0
0
0
0
5
0
1
2
0
0
0
0
0
0
0
0
0
1
0
41
0
5
29
0
1813
0
0
0
3
43
20
4
20
7
2
10
3
0
0
0
0
0
       0 hpf       
174
2
7
2
25
0
0
0
0
0
0
0
0
69
0
0
0
3
0
0
6
5
13
0
20
10
102
10
0
0
0
0
0
0
0
0
0
0
0
0
0
0
10
0
0
0
5
7
0
2
0
0
0
0
78
0
6
8
92
0
3
278
0
0
0
1
0
1
2
12
1
0
4
0
133
119
0
0
0
0
0
0
165
12
10
0
5
0
0
0
0
11
0
17
2
2
0
4
0
0
4
9
0
1
0
0
0
0
3
6
4
0
0
0
287
0
0
8
1
0
0
0
0
74
48
0
0
6
36
0
0
3
0
46
16
0
3
0
6
0
0
0
0
6
18
275
3
11
2
9
0
0
15
12
0
0
9
1
0
0
0
0
0
15
0
5
106
0
0
5
0
10
46
1
0
6
2
0
11
20
78
0
0
0
0
1
0
0
0
0
0
0
10
0
0
0
32
2
0
0
7
0
0
2894
9
2
0
0
0
23
0
0
0
0
0
219
0
9
0
0
0
0
0
0
0
0
0
0
1
0
17
3
40
100
7
2124
0
0
0
47
71
4
2
13
2
1
0
14
0
0
0
0
0
       4 hpf       
52
0
2
3
11
15
26
7
0
8
0
0
0
63
0
1
4
0
0
2
13
9
6
0
0
0
61
13
24
0
0
0
0
0
0
0
0
0
0
0
0
0
8
6
0
1
0
2
2
0
0
2
1
0
10
4
7
0
18
0
0
134
2
0
0
0
0
6
3
0
0
1
0
8
103
32
3
0
0
0
0
0
35
0
6
0
0
0
0
1
0
0
5
18
0
9
0
7
4
2
2
2
4
1
0
0
0
0
2
0
4
1
0
0
94
0
0
4
3
0
0
0
0
79
0
0
0
1
39
2
6
1
5
17
4
0
0
0
12
5
0
3
0
0
11
342
22
7
4
33
3
7
0
21
2
32
1
3
4
0
0
0
3
0
0
0
20
0
0
0
0
3
20
3
1
0
25
0
5
0
17
7
0
14
11
15
1
6
0
0
0
0
0
0
0
0
0
16
1
0
97
2
11
15859
120
2
2
1
7
799
0
0
0
0
0
17
0
62
127
0
0
1
0
2
12
1
0
0
0
0
28
0
13
66
0
2295
0
16
5
12
94
2
0
3
0
0
0
7
0
0
0
0
0
       6 hpf       
31
3
0
4
0
0
9
1
1
30
0
0
1
91
0
5
4
2
1
4
86
1
0
0
1
0
51
37
19
1
3
0
1
0
15
0
12
46
63
70
4
1
9
0
0
4
0
0
0
3
1
1
1
0
12
2