Speices |
Datasets |
APA sites |
Gbrowse |
Example |
Description |
Zebrafish
(Danio rerio) |
Danio.rerio_Zv9_embryonic_development |
108290 |
Chr |
View |
Descripting dynamic APA sites and 3'UTRs, and detailing
the heterogeneous cleavage sites during zebrafish embryonic development. |
 |
NCBI SRA:SRA036536 |
Dynamic landscape of PolyA sites
and 3'-UTRs used throughout the embryonic development of zebrafish
(Tubingen, Danio rerio) from 0 to 120 hpf, detailed
at 0 hpf, 4 hpf, 6 hpf, 12 hpf, 24 hpf (1 dpf), 48 hpf (2 dpf),
72 hpf (3 dpf) and 120 hpf (5 dpf). hpf, hours post fertilizaiton.
dpf, days post fertilizaiton. |
Case (0 hpf) |
Case (4 hpf) |
Case (6 hpf) |
Case (12 hpf) |
Case (24 hpf) |
Case (2 dpf) |
Case (3 dpf) |
Case (5 dpf) |
embryo
at 0 hpf |
embryo
at 4 hpf |
embryo
at 6 hpf |
embryo
at 12 hpf |
embryo
at 24 hpf |
embryo
at 2 dpf |
embryo
at 3 dpf |
embryo
at 5 dpf |
|
|
|
Mouse
(Mus musculus) |
Mus.musculus_mm9_thymic_development |
226858 |
Chr |
View |
Descripting
dynamic APA sites and 3'-UTRs, and detailing the heterogeneous cleavage
sites during mouse thymopoiesis. |
 |
NCBI SRA:SRP039327 |
Dynamic landscape of PolyA sites
and 3'-UTRs used throughout the thymic development of mouse
(Mus.musculus) from 13.5 dpf to 90 dpp, indicated at
13.5 dpf, 15.5 dpf, 18.5 dpf, 0 dpp, 6 dpp, 22 dpp, 45 dpp,
90 dpp. hpf, hours post fertilization. dpp, days post parturition.
|
Case (E13.5 dpf) |
Case (E15.5 dpf) |
Case (E18.5 dpf) |
Case (2 dpp) |
Case (6 dpp) |
Case (22 dpp) |
Case (45 dpp) |
Case (90 dpp) |
thymus of embryo at 13.5 dpf
|
thymus of embryo at 15.5 dpf |
thymus of embryo at 18.5 dpf |
thymus at 2 dpp |
thymus at 6 dpp |
thymus at 22 dpf |
thymus at 45 dpp |
thymus at 90 dpp |
|
|
|
Human
(Homo sapiens) |
Homo.sapiens_hg19_human-all22-tissues |
179532 |
Chr |
View |
Descripting APA sites and 3'-UTRs, and detailing
the heterogeneous cleavage sites in 22 normal tissues from human. |
 |
|
Genome-wide profiling of Poly(A)
sites and 3'-UTRs produced by APA in human 22 tissues, such
as brain, lung, thyroid, spleen, stomach, kidney, cervix, heart,
lymphNode, placenta, uterus, bladder, breast, prostate, liver,
pancreas, small Intestine, thymus, adipose, skeletal Muscle,
ovary and testicle. |
Case
(Tissues) |
Catalog*
|
Gender
|
Gender
|
Age
|
Brain |
AM7962 |
Caucasian |
Female |
77 |
thyroid |
AM6892 |
Caucasian |
Female |
60 |
spleen |
AM7970 |
Caucasian |
male |
70 |
stomach |
AM7996 |
Caucasian |
male |
15 |
kidney |
AM7076 |
Caucasian |
male |
64 |
cervix |
AM6992 |
African American |
Female |
40 |
Heart |
AM7966 |
Caucasian |
Male |
74 |
Lymph node |
AM7894 |
Caucasian |
Male |
46 |
Placenta |
AM7950 |
Caucasian |
Female |
unkown |
lung |
AM7968 |
Caucasian |
Male |
65 |
Uterus |
AM7892 |
Caucasian |
Female |
63 |
Bladder |
AM7990 |
Caucasian |
Female |
55 |
Breast |
AM6952 |
Caucasian |
Female |
78 |
Prostate |
AM7988 |
Caucasian |
Male |
73 |
Liver |
AM7960 |
Caucasian |
Male |
64 |
Pancreas |
AM7954 |
Caucasian |
Female |
83 |
Small intestine |
AM7984 |
Caucasian
|
Male |
15 |
Thymus |
AM7964 |
unkown |
Male |
10 moths |
Adipose |
AM7956 |
Caucasian |
Male |
62 |
Skeletal muscle |
AM7982 |
Caucasian |
Male |
60 |
ovary |
AM7964 |
Afican American |
Female |
47 |
testes |
AM7972 |
Caucasian |
Male |
34 |
*Catalog and donor informatin of
FirstChoice? Total RNA: human Normal Tissue (Ambion) |
 |
|
|
Human
(Homo sapiens) |
Homo.sapiens_hg19_breastCancer_MCF10A-MCF7-MB231 |
46531 |
Chr |
View |
Descripting APA sites and 3'-UTRs, and detailing
the heterogeneous cleavage sites in two human breast cancer cell lines
MCF7 and MB231, also one cultured normal epithelial cell line MCF10A. |
 |
NCBI SRA:SRA023826 |
Genome-wide profiling of PolyA
sites and 3'-UTRs produced by APA among human breast cancer
and normal cells. MCF7 and MB231, two human breast cancer cell
lines, and MCF10A, one cultured mammary epithelial cell line.
|
Case (MCF10A, cancer
cells) |
Case (MCF7, cancer cells) |
Case
(MB231, normal control cells) |
Human breast
cancer cell line |
Human breast
cancer cell line |
One cultured
mammary epithelial cell line. |
 |
|
 |
|
|
Human
(Homo sapiens) |
Homo.sapiens_hg19_rhinosinusitis_11NP-25NP-26NP |
83641 |
Chr |
view |
Descripting APA sites and 3'-UTRs, and detailing
the heterogeneous cleavage sites from the nasal polyps and nasal uncinate
process mucosa of patients with chronic rhinosinusitis with nasal
polyps. |
 |
NCBI SRA:SRP014739 |
Genome-wide profiling of PolyA
sites and 3'-UTRs produced by APA from the nasal polyps and
nasal uncinate process mucosa of patients with chronic rhinosinusitis
with nasal polyps. Patients grouped by 11(N, P), 25(N, P), 26(N,
P). N, nasal polyp; P, nasal uncinate process mucosa. |
Patient(Case11) |
Attributes |
nasal
polyp (N) |
nasal mucosa (P) |
tissue |
nasal polyp |
nasal uncinate process mucosa
|
sex |
female |
female |
age |
46 years |
46 years |
source
name |
nose |
nose |
patient |
11 |
11 |
patient
condition |
chronic rhinosinusitis with
nasal polyps |
chronic rhinosinusitis with
nasal polyps |
|
Patient(Case26) |
Attributes |
nasal
polyp (N) |
nasal mucosa (P) |
tissue |
nasal polyp |
nasal uncinate process mucosa
|
sex |
female |
female |
age |
52 years |
52 years |
source
name |
nose |
nose |
patient |
26 |
26 |
patient
condition |
chronic rhinosinusitis with
nasal polyps |
chronic rhinosinusitis with
nasal polyps |
|
Patient(Case25) |
Attributes |
nasal
polyp (N) |
nasal mucosa (P) |
tissue |
nasal polyp |
nasal uncinate process mucosa
|
sex |
male |
male |
age |
46 years |
46 years |
source
name |
nose |
nose |
patient |
25 |
25 |
patient
condition |
chronic rhinosinusitis with
nasal polyps |
chronic rhinosinusitis with
nasal polyps |
|
|
 |
|
|
Human
(Homo sapiens) |
Homo.sapiens_hg19_rectalCancer_12N-VS-12T |
74116 |
Chr |
view |
Descripting APA sites and 3'-UTRs, and detailing
the heterogeneous cleavage sites in human normal and tumorous tissues
of intestinum rectum. |
 |
NCBI SRA:SRP039399 |
Genome-wide profiling of PolyA
sites and 3'-UTR used in normal and tumorous tissues of human
intestinum rectum. Normal intestinum rectum VS Tumorous intestinum
rectum. |
Patient(Case
R12) |
Attributes |
normal
intestinum rectum |
rectal cancer |
tissue |
normal rectum tissue |
rectal cancer tissue |
sex |
male |
male |
age |
53 years |
53 years |
source
name |
intestinum rectum |
intestinum rectum |
patient |
R12 |
R12 |
patient
condition |
rectal cancer with no metabasis |
rectal cancer with no metabasis |
|
|
 |
|
|
* '+'
icon unfolds more description, 'view' button supports
quick access to a example query, and 'chr' button
links the browsing in genome browser. |
|