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Analysis of genomic poly(A) sites
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Human
Homo sapiens
 Database: for
 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.
 

 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: uc003qht.2 
Gene name: PERP
Chromosome: chr6(-)
Gene locus: chr6(-):138409641-138428660
Gene description: Homo sapiens PERP, TP53 apoptosis effector (PERP), mRNA.

Transcript id: uc003qht.2 
Transcript name: PERP
Transcript locus: chr6(-):138409641-138428660

Start codon: 138428475
Stop codon: 138413179
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
138413053, 138412865, 138412260, 138411981, 138411927, 138411843, 138409644
polyA signals: ATTAAA, none, AATAAA, none, AATAAA, ATTAAA, AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>uc003qht.2 4302bp 
CTCTGAGTCACCGGAATCTAGGTGGGGCCGCCCGGAGCGGCGTCCTCGGGAGCCGCCTCCCCGCGGCCTCTTCGCTTTTGTGGCGGCGCCCGCGCTCGCAGGCCACTCTCTGCTGTCGCCCGTCCCGCGCGCTCCTCCGACCCGCTCCGCTCCGCTCCGCTCGGCCCCGCGCCGCCCGTCAACATGATCCGCTGCGGCCTGGCCTGCGAGCGCTGCCGCTGGATCCTGCCCCTGCTCCTACTCAGCGCCATCGCCTTCGACATCATCGCGCTGGCCGGCCGCGGCTGGTTGCAGTCTAGCGACCACGGCCAGACGTCCTCGCTGTGGTGGAAATGCTCCCAAGAGGGCGGCGGCAGCGGGTCCTACGAGGAGGGCTGTCAGAGCCTCATGGAGTACG/CGTGGGGTAGAGCAGCGGCTGCCATGCTCTTCTGTGGCTTCATCATCCTGGTGATCTGTTTCATCCTCTCCTTCTTCGCCCTCTGTGGACCCCAGATGCTTGTCTTCCTGAGAGTGATTGGAGGTCTCCTTGCCTTGGCTG/CTGTGTTCCAGATCATCTCCCTGGTAATTTACCCCGTGAAGTACACCCAGACCTTCACCCTTCATGCCAACCCTGCTGTCACTTACATCTATAACTGGGCCTACGGCTTTGGGTGGGCAGCCACGATTATCCTGATTGGCTGTGCCTTCTTCTTCTGCTGCCTCCCCAACTACGAAGATGACCTTCTGGGCAATGCCAAGCCCAGGTACTTCTACACATCTGCCTAACTTGGGAATGAATGTGGGAGAAAATCGCTGCTGCTGAGATGGACTCCAGAAGAAGAAACTGTTTCTCCAGGCGACTTTGAACCCATTTTTTGGCAGTGTTCATATTATTAAACTAGTCAAAAATGCTAAAATAATTTGGGAGAAAATATTTTTTAAGTAGTGTTATAGTTTCATGTTTATCTTTTATTATGTTTTGTGAAGTTGTGTCTTTTCACTAATTACCTATACTATGCCAATATTTCCTTATATCTATCCATAACATTTATACTACATTTGTAAGAGAATATGCACGTGAAACTTAACACTTTATAAGGTAAAAATGAGGTTTCCAAGATTTAATAATCTGATCAAGTTCTTGTTATTTCCAAATAGAATGGACTCGGTCTGTTAAGGGCTAAGGAGAAGAGGAAGATAAGGTTAAAAGTTGTTAATGACCAAACATTCTAAAAGAAATGCAAAAAAAAAGTTTATTTTCAAGCCTTCGAACTATTTAAGGAAAGCAAAATCATTTCCTAAATGCATATCATTTGTGAGAATTTCTCATTAATATCCTGAATCATTCATTTTAGCTAAGGCTTCATGTTGACTCGATATGTCATCTAGGAAAGTACTATTTCATGGTCCAAACCTGTTGCCATAGTTGGTAAGGCTTTCCTTTAAGTGTGAAATATTTAGATGAAATTTTCTCTTTTAAAGTTCTTTATAGGGTTAGGGTGTGGGAAAATGCTATATTAATAAATCTGTAGTGTTTTGTGTTTATATGTTCAGAACCAGAGTAGACTGGATTGAAAGATGGACTGGGTCTAATTTATCATGACTGATAGATCTGGTTAAGTTGTGTAGTAAAGCATTAGGAGGGTCATTCTTGTCACAAAAGTGCCACTAAAACAGCCTCAGGAGAATAAATGACTTGCTTTTCTAAATCTCAGGTTTATCTGGGCTCTATCATATAGACAGGCTTCTGATAGTTTGCAACTGTAAGCAGAAACCTACATATAGTTAAAATCCTGGTCTTTCTTGGTAAACAGATTTTAAATGTCTGATATAAAACATGCCACAGGAGAATTCGGGGATTTGAGTTTCTCTGAATAGCATATATATGATGCATCGGATAGGTCATTATGATTTTTTACCATTTCGACTTACATAATGAAAACCAATTCATTTTAAATATCAGATTATTATTTTGTAAGTTGTGGAAAAAGCTAATTGTAGTTTTCATTATGAAGTTTTCCCAATAAACCAGGTATTCTAAACTTGTTTCCAGTTTGTAGTTTTTCCATTTTTCAAATCTGGGGAAAGGAATTAAAAAAAAAATGGGTAATAAGAACATGGGATATAATGAAAAGTGGTTTTTGTTTGTTTTTTTGTTTGAAGTTTTAAGGGCCTTGCTCATTTTAGGTGTCCAAAACCAATTTTTGAGTGGAGATTAATGAATTCTAATAGTCTATTCCCTGAACTTTTCCTCAATGAACAATACCCTAGACACACATTAAACAATTTCTCTGCAGTGCTATCAACCAGAGGAAAATGGACTAAGAGATTTCTGGCAGGTTCAGACACCCGGGGGACATGTGTGCAGTGTAGCTGAAGCCTCCTCCTTGTGCTGGGGTCCCCTTCCATTCAGGTGGTGGGGTAGCAGTCTCTCTATTTTCCCCTTGCCCTCCTTCCCATTTTATCATTTGTTATTTTTTTTCCCACCATAAGTCATATGTTACTTCCACTATGGTGTATGTCATTGTGAGGATGGGTGCAGAGAGGCTGGGTGGGAGAACGGAAATATATCTCCCTAGGGCTACTGTTGGCCAGCTAGTCCTTGGCAGTGAATTTTTCTATGCTTTTCAAAATGCGAGGTGAATGTTTCTCATAGAGAAATGTAATCTGGGTGATTATACCAAAATTGAAAAGAAAAACCCACACAACTATGCCGTGGCTGGTGGAGAATTTGAAGTGGTCATTAAAAATGTTAAAAATCCCATCTTTTAAAGTGATACCACAGCTCATTCAAGAAGATACTGGATATCTAGAGATTAAGAAACGTGGTCTCCTGTTAAACATGAAAATGACTCCGTTTATAAGCTTCTCTACCACATGCACTTGTCTTTGCATGATTTCCCATCCAGCCTTCTTCCCCTCCTCAATCACACAATACCTTAACGGCGCACATTTAGGAAAAATGCAACCTCCTGGGACCAACGAGCCTGATATAATAGAACCATGTCAACCTAAAGTATTTATGACAAAGATAAACTCTTATTTTGCAGAAATGGTCTGCTTCCTTCAGCCTTGTTCTAGTATAGAGATCTGCCATTCCTTGTTGATCCAGATTCACCAAGACAGATACCTTTATGTCATAACAGAAGGGAAGTTCCAGAGGATTCTGGAGAGTAATGAAGAATTGGGCTGAGAAACCACCTGAAGGCTAACAGTGCATTGCATGAGATTTCCCACAGTAAAGCTGAGGTGCTTTTTGGTTCAGTAATTAAATATTGAGTTCCCACCCTTTAAATAAGCAGTTCTAGGTTCCTAAGCAATTATTTCACTCTGTAAGTAGCCAGACATGCTAAGTGGCACTTACTGCTGATTGTAACAAAGAAGTAATATATCAAGGTCTTTCCATGTTCACACAAGGTAGCTTGTGTGTAATAACTTAGCTTCAAAACCATAGACTGCAGAACTCACAAGTTCAACAGCCTTTCCTTTTTTAAGGAAATGAAAACAATGGAAAATATAGTCATCATAACTTAATTCGGTTTATTTTTTTTTTCTGTAAACTCCCCCTGAAAGACATTCCTATTAATACAGTAAATGTGAACACTGACTTGTTTTTATAAGCACATCTGAAAGGGCATATTTGAGTCTCATCCCAACTTTGGTCCTTGCTATCTGTGCAGGCTTGGGCAGGTCATCTCCCTGCTGGTCTCAATATCCTCACCTGTAAAATGATTGTAAATGATCCCCCTACCTTCAAGATTCTCTGATTGATAGAATTTTTTCTTTAATTAAAAAATTTTAAATATTCCTTGAGTTGGAAGCACTGATCAATAAGTGGATTGCTTAGGGAGGTTGGAACGAATAGATTCAGTCCCAACTTCCTCTTTTAAATTCCCTCTTCCTCACTCTTCCTGCAACACTTATTTTTACAGTTGAGTTTTAAAAATAAGTAATATATAAAATAATTTCTGTAGTGTGGTTTCAGATTTAAAAATTCCTGCAGACAGGCTGGGCTTGCAACCCCATCAGTCGATGGTCAGAGCCCTTTGCTTTTTGAGACCATTTTTAGGTGAGCTTGGCTTGCCTGGATACAGTGTGCAGTGCATTCTTCCTGAATTTTGCAATTCTGGTATCTGGGTGTATTTTCTAGGTGTGTCAGGGTGAGTGTAATCCACCTAGGGTGTGGAAAAAGCCAAGAAAGGGAAATTAAAAGAGGTTCCTATCCAGTCATGTTAATGATCTTCCACTTGTACTATCCTGTGCTTCGTTGTTAACCTCGAAAACATACTTTGTTGGCTGCAAAAATAAACAAAGGGAAACTCA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>uc003qht.2 PERP 194aa
MIRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHGQTSSLWWKCSQEGGGSGSYEEGCQSLMEYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFTLHANPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDLLGNAKPRYFYTSA*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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