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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
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 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000056627 
Gene name: cxcl14
Chromosome: chr14(-)
Gene locus: chr14(-):25400463-25410337
Gene description: chemokine (C-X-C motif) ligand 14 [Source:ZFIN;Acc:ZDB-GENE-000619-1 ]

Transcript id: ENSDART00000125923 
Transcript name: cxcl14-001
Transcript locus: chr14(-):25400463-25410337

Start codon: 25410091
Stop codon: 25401648
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
25401108, 25400470
polyA signals: AATAAA, AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000125923 1732bp 
GTCGGCGGGCTCTGCATATCAATGAGGCGCTCGAGCGCGCGTTTATAGAAGCTCCGCTCGAGATTGAGGAGAGTCCGAGAGCGCGTGTGACGTGTCGCGGAGCACATTCAACCTGCTACTGACATCACAGAGGCAGAAACAGAGTTTATCATCAAACCGACACTGTTTGAGGATCTCCATTATTGGATTTGAGTGGTACAAAACAGACCGGAGGCTACAGGAGTTTGTCAACAAACTATTGGGGATGAATCGCTGTAGTACGGCCGCTTTATTTTTGCTGGTTATCGCCATTTATTCGCTCAACACAGAGG/CATATAAGTGCAGATGCACAAGAAAAGGGCCGAAGATCCGGTACATAGATGTACAAAAGCTGGAGATCAAGCCTAAACATCCGTACTGCCAAGAAAAGATGATATT/TGTCACCATGGAAAATGTGTCGCGTTTCAAAGGTCAGGAGTATTGCCTGCATCCAAGACTCCAGAGCACTAGGAACCTTGTCAAGTGGTTCAAAATCTGGAAGGACAAACACAG/GACGTTTGAAGCCTAAATGTTCTACATTATGCACAAGGCTAAAAGCATTGTGGGATGACACTACCAGTGAACTGTGGATGACCAGAGGACCAATTTTTTAAAAGCATGACAAAGCATATACCCAGACAAGCTTATAAAGCACACCGGTCTATTTTATGAAGTTATATTAATGTGGAATAATGTATAGTCTTACACAAATGTTTCTTATGAGCCAAATGTGCAGTTATGGCAGAGAATGTAAGAAGCGATCATTACATTCCTACAATGTGTAATGTTTTCTGAAGCATCAGTTCTTGGTCGTTGTGTCGTGGCATATAAAGGGTCTTGACACTTATATTTTGGATACTGTCTGGTTTGAAACTACTGTGATCTTCTATCCACAGGTGTCAAAGTAGATCTTAGAGTTCTCACAGTACAAAAGAACTGAAATATCGAGGAGGTGTATATAATGTCTACAAAGAATTTATAATATTCTTTGCCAACATTCAGGCTGGTAAAAGGAGGCAAAGTGTTTTTCACTTATTTCAAAAAATAAAAATGTTTCTCATTGATCTGCCCAAAAGTGCCGGAGGAACTTTCGTTTATTTTATACGTTAGTATAAAGTTTATAAGTATAGTTTATTTGCTTTGGAATTTGGTACTTCATGGTGAAATGAAAGAGACAACTACATAATATAAACCATTTAAATCATATCATGCATTTACTTTATATTATTTACACACATACTTTATTCCTCGGTGGACATGTACCACCATACGAAGAGCACATGAACTTTGGGGCCTGTGTTTAAAATGAAGCTTTTTTTATTATTATTTAACATCGGCCCTCTTATCAGCACATTCTGAACTACATGTGCCTCCTCTTTGAGGTGTGCAGGTTTTGCAAGCTATTGTTTTCTTGTTTTGGTATGACTGTGTTTTCGTTTTCTTTTTGGTAAATGGAATGTTTCTCGTCTCTTCTTGTACATCAGATTGTATGTATAAGCACACAGAATATAGGCTCTTGTGTATAGAGCATCTTGCCTAGTCTAGCTTGTTGAGGATTTATTAGTGAAGCCTATTGTATCACAGAGTTGTCGTTTTACTATTTAAATAATAAATATTAGAAATGTTTGATTCTTTGTGTTTGGACTGACCCACCAAACACAACTTAAGTCCAAGGAGTGTAATCTTCGAGCACAGCAATAAACATTTAAGTAAA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000125923 cxcl14-001 101aa
MNRCSTAALFLLVIAIYSLNTEAYKCRCTRKGPKIRYIDVQKLEIKPKHPYCQEKMIFVTMENVSRFKGQEYCLHPRLQSTRNLVKWFKIWKDKHRTFEA*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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