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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
 Database: for
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000087474 
Gene name: ccr6a
Chromosome: chr20(+)
Gene locus: chr20(+):30636455-30640427
Gene description: chemokine (C-C motif) receptor 6a [Source:ZFIN;Acc:ZDB-GENE-040625-126 ]

Transcript id: ENSDART00000122256 
Transcript name: ccr6a-001
Transcript locus: chr20(+):30636455-30640427

Start codon: 30639300
Stop codon: 30640425
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
30636076, 30640978, 30641318
polyA signals: AATAAA, AATAAA, AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000122256 1231bp 
TGCTCTGCCCAGGTTGTCTTTCCTCATTAGAAACCAGACGGAAAGAGAAGTCTGAAGCCTCACGCTACATTCCAGAAGACTTGTTTGTGTGAATAGCG/AGAAAATGATTAATGATTCCTCTGAAAACTACAACTACGGTGATTATTATGAAGGAGCTGTGGAGCCGTGTTCTGTGGAGAGCAGGCAGAAGCTTGAGAACTTCCTCCGCTTGTTTATTCATCCAATCATTTGTGTGGCTGGTTTCATCGGCAACAGTCTTGTGATTGTAACGTACGCCCTCTACAAGCGAACCAAGTCCATGACTGACGTGTATCTGCTGAATGTGGCCATCGCTGACATCCTGTTTGTGGTGGCTCTGCCTTTAATCATCTACAGCGAGCAGCACAGTTGGGCCATGGGGAACATGTCCTGCAAGCTTCTGCGTGGCATCTATAGCGTCAATCTGTACAGCGGGATGTTACTTCTGGCTTGCATCAGTGGAGATCGATACCTTGCCATTGTGCAAGCCCGTCGCTCGTTCCGGCTGCGTTCAAGCACTCTTCTTTACAGCCATTTAGTTTGTGCAGCCGTCTGGTTGCTGGCCTTGCTTCTGTCCCTTCCCACCTTCATCTTTTATGAGCGTTACGAAAATGGTCTGACTGAATCTACCTTCCTATTCAACAATAATACCATCATGGAAGAAATTCAGTATGTCTGCTCTTTCAAGTTTGAGTCGAATGAAACAGCGCGTATGATGAAAACCATCGTGCCCAGCTCTCAGGTGGCAGTGGGTTTCTTTTTGCCTTTGCTCATAATGGGATTCTGTTACTCCAGCGTCATTGTCACCCTTCTTCGGGCCAAGAACTTTCAGAGGCACAAAGCAGTGCGTGTAGTGCTCACCGTGGTCCTTGTGTTTGTGGTCTGCCATATGCCTTATAACCTTGTGCTGTTGTACCATACCATCAATTTATTTGAACAGCAGGAATGCAGCCATGAGGAGGCCGTCGCGTTGACCATGACCATCACAGAAAGTTTGGCATACCTGCACTCTTGCCTCAATCCTCTGCTGTATGCCTTCATCGGGGTCAATTTCAGAAACCACTTCCGGAAGATCCTACGGGACATTTGGTGTTTGGGGAAGAACTATATGTCGGCAAGGCGGTCATCACGTGTTACCACTGAAATGTACCTTTCGACGCGGCGCTCTATGGATTATTCCAACAATGAAAATGGCACGTCGTTTACCATGTGA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000122256 ccr6a-001 376aa
MINDSSENYNYGDYYEGAVEPCSVESRQKLENFLRLFIHPIICVAGFIGNSLVIVTYALYKRTKSMTDVYLLNVAIADILFVVALPLIIYSEQHSWAMGNMSCKLLRGIYSVNLYSGMLLLACISGDRYLAIVQARRSFRLRSSTLLYSHLVCAAVWLLALLLSLPTFIFYERYENGLTESTFLFNNNTIMEEIQYVCSFKFESNETARMMKTIVPSSQVAVGFFLPLLIMGFCYSSVIVTLLRAKNFQRHKAVRVVLTVVLVFVVCHMPYNLVLLYHTINLFEQQECSHEEAVALTMTITESLAYLHSCLNPLLYAFIGVNFRNHFRKILRDIWCLGKNYMSARRSSRVTTEMYLSTRRSMDYSNNENGTSFTM*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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