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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000058389 
Gene name: si:ch211-89f7.4
Chromosome: chr5(+)
Gene locus: chr5(+):14556212-14594925
Gene description: chemokine CCL-C5a [Source:ZFIN;Acc:ZDB-GENE-060526-181 ]

Transcript id: ENSDART00000099611 
Transcript name: ccl-c5a-001
Transcript locus: chr5(+):14556212-14594925

Start codon: 14588235
Stop codon: 14594719
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
14594919
polyA signals: AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000099611 949bp 
CCGCGCGGCGCAGCGATGGAATCATGAGCTCGTGCGCGCTTGGGAAACTTCGGATGATCCGGGATCAGATTTACCATTTGCGCACAGCCGACGGAACAAGCAAAACAAGAGCCCCTATAACGATCTCAG/ATGAGCTCATACTACACCGCCAACATGCTTCCCAGACTGAGAACCGATAAAACAAAATTGGTCCTGCACGCTCCCATGGTTTGCTGGAAATTACAAGACCAGACTTGCTTCCCCTTCGGCAATTTCAG/AAAGGGGCAGGCCTTCAGTCATAGTGAAACCTTAGAGTGTGTATAAACCAGGGCAGCGATAGAGCGGTGAGAGGAGAGACTCGCAGATCTTTCAGACTCAACACTCTTCTAGCTTCTCCAGAACTGCAATGGCTTCATCCATCATGTCTGCGTTCTGTCTGGCTGTTTCTGCTTTGCTGCTCTGTTTCTACAGCAGCCCGACAG/TGGCTCAGGCAGATTTAGCACTGGACTGTTGTCTGACGGTCAGCCCAAGAGTCATTCCCAAACACGTTATTCTCGCTTACCAGAAGCAGAGCAGAGGTGACGGCTGCCCACGTGATGCTGTTAT/ATTCATCACCAGGAAAGGATTGAACCTTTGTGCTCCGCCTGCCAGTGAAGAGTCGTGGGTAAGAGACACCATGACGTTTCTGGACAAAAGGAGGGAAAAGTGCAAAGAAACAAGGTTCATC/GAGAGACGCTGTCATGCTCTGAAATTTATGAAGTTCTGAGTGAACACATACTGTGTGCACAGTAATATATGCATTAAATGGCAGCTGTTTATGCTAATGAAAAGAGTACATTCCTCCTAAATATCTCTTTGTTTCTTCAGTTGTTTCTATTTCATCATTCAGTTTGCGATTTGTAAATTCACACAAATACTTTGTTACAGTCATATTTTTGCATTTTAAGTGAATAAAGTCTTTGACATCATT
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000099611 ccl-c5a-001 120aa
MASSIMSAFCLAVSALLLCFYSSPTVAQADLALDCCLTVSPRVIPKHVILAYQKQSRGDGCPRDAVIFITRKGLNLCAPPASEESWVRDTMTFLDKRREKCKETRFIERRCHALKFMKF*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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