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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000062471 
Gene name: FAM19A4
Chromosome: chr11(-)
Gene locus: chr11(-):18096509-18213516
Gene description: family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 [Source:HGNC Symbol;Acc:21591]

Transcript id: ENSDART00000090401 
Transcript name: zgc:154141-201
Transcript locus: chr11(-):18096509-18213516

Start codon: 18170246
Stop codon: 18097087
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
18204989, 18096509, 18096333
polyA signals: AATACA, ATTAAA, multi

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000090401 1468bp 
CTCGGGAGGAGTGTGCGAGGCGCAGTTATCATCGCAGACTTCCCCATCACTCACAGTCCCAGCGGTTCCGCAGGAAGACAGCTGTTAATAACCCAACAAGCATGTCTGGAACATTATAAGGTCATTAGTCTACTAACCTCCATATGGATTTACACACTTCTGTTTCTGCGATTCGGCGCTTGCGCTTTTTCTTTTCTTTTTTTGTGACGAGATTCACAAAATATTGGGCGAATTCGGTTTATGAACTCTGCGTTTCTCTCTGCGTGTGATGGACAGGCGGCTATTCAGCTCGAGCTGGGCTGGAGAGAGTAGAAAATAAGCTCGTTTAAAACAAACATCTGTCTTCAGGACTCCTGCTACATCCCGAAGCGAAGGAGAATGCTTTCGCTTTCATAAACGGAG/GATCTGAGCGGTGTTTGAGGACACAGGAGGAGAGACATGTCCAGCTCACAGAGAAGAGACTGATCAGACAACACAGAAAGATGCAGCTGTGGGGTCGATCTCTGTGGCCGCTGCGGATTGTGCTCTTGTTCACCTTGGTAATGTGTTCGTGTGGGTTGGTTTCTGCGGGCACGCGGAGTCTGCGGGGACACACAG/CTTCATACCAGGTAAAGCAGGGTACCTGTGAGGTGGTTGCCATCCACCGCTGCTGCAATAAGAACAAGATTGAGGAGCGTTCACAGACCGTCAAGTGCTCATGTTTCCCTGGTCAGGTGGCCGGTACCACACGTGCACAGCCATCTTGTGTGGAGG/CTTCCATCGTGCTACAGAAGTGGTGGTGCCAAATGCACCCATGTTTGGATGGCGAGGAGTGCAAAGCTCTTCCAGATCTGACTGGCTGGTCCTGCAGCACCGGTAACAAAGTCAAAACCACTAAG/GTCACACGATAGCAACAACATGGCAGTTCTACCATGAGGCCCAAGACTCCTTAACGACCCACTGGAAAAGAAAACTTTCTTGTTTAAGACACTGACATTCTGAAGAACTCAGTACATGTACAGTACATGCAAGAGATTGGACAAACTGATTGTAGACTATAGACAGCATTTTGATTTGACAGAAGACATACAAGGATCTCTGTATAAACCTGAAGACTGTATCCATAAGCTCAAAGTGACTTCCTGGATTTCCACTGGTTTGTGAGTGCATGTATGAGAGATTAGAGGACGTTGGACTTGAAGGACAAACCCTGGACTGTCAGATTCGGCTGGAGGTTTGTGTGACTGTCTGTAAGAGACTGTAGTTTAACTATGTTTATCGGCTTTCCAGCACACAGCAAACTTTATATTCACGAGTAGGGAGGGAATTTTGCTCTGAATGTGTGATTCACAAGTTATTGTCAATTTGCTCCTCTGGGTCAAGTCATTACCCTGAAAATGTTTCCTTTAAGTCATTTTGCACTTCTAATTAGGGTTGCTGAATAGGATCATAACAACAAATTAAAAATTCATGAGCCTTTTTTTGCACT
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000090401 zgc:154141-201 136aa
MQLWGRSLWPLRIVLLFTLVMCSCGLVSAGTRSLRGHTASYQVKQGTCEVVAIHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVLQKWWCQMHPCLDGEECKALPDLTGWSCSTGNKVKTTKVTR*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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