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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
 Database: for
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000058570 
Gene name: ccl1
Chromosome: chr8(+)
Gene locus: chr8(+):1238684-1252615
Gene description: CC chemokine 1 [Source:ZFIN;Acc:ZDB-GENE-000208-28 ]

Transcript id: ENSDART00000081457 
Transcript name: ccl1-001
Transcript locus: chr8(+):1238684-1252615

Start codon: 1238705
Stop codon: 1252416
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
1252610
polyA signals: AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000081457 500bp 
AATCATTCTCAGAAAGCCACGATGGAGTTCAGATCATCATGTCTCCTTCTGCTCGTCTGCTTTACCATCATCATCCTCACCGACAACAAAG/GTGCAGCCATTCCAACATGCTGTCTGAGTGTTTTACGCAGAATCCCTAAACGTGTACTGCGATCGGTCAGAACATATGAGGTCCAGGACACATCTGGACACTGTGAGATTAAGGCTCTAAT/ATTACACTTCAAGGGGAAGAAAATCTGTGCTCATCCCAAACTGGAGAGATTCTTGAAGAAAATGCTGAAGCACAAACCTAAAAAGCCTTAAAGGAAAGAGCTTCAGGCTGAAATCACGGATACAGACGGCTTCAGGACTCTTCATCTACATTTTATGTCTTTAAATCTGTTTATTTTTATATAAAAGTAATCATGTAATGTTTCCAGCTGATGCTTCAGACAGTGTGTGTGGCGATATACTGTGTGTGTTACGCTCTAATATCAACTAATAAACACTTGTTTCAGTTT
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000081457 ccl1-001 94aa
MEFRSSCLLLLVCFTIIILTDNKGAAIPTCCLSVLRRIPKRVLRSVRTYEVQDTSGHCEIKALILHFKGKKICAHPKLERFLKKMLKHKPKKP*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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