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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000054846 
Gene name: XCR1(3of4)
Chromosome: chr23(-)
Gene locus: chr23(-):40247743-40248642
Gene description: chemokine (C motif) receptor 1 [Source:HGNC Symbol;Acc:1625]

Transcript id: ENSDART00000077122 
Transcript name: CU657980.1-201
Transcript locus: chr23(-):40247743-40248642

Start codon: 40248640
Stop codon:
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
40247620, 40247571, 40247524
polyA signals: none, TATAAA, AATACA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000077122 900bp 
ATGACTGATGAGAACACAACATATGACTATGATGATTACTATGAGGACCAGTTGTGCCGCAAAGACGACGTGGTCAAATTTGGATCCATTATTATCCCGCTGTTTTTCTCTATAGTGGTTGTGATGAGCTGCATTGGGAACATCCTGGTCTTGATCATCCTGGCGCTTTACGAGAATCTGAAATCCCTGACCAATGTGTTCATCATCCATTTATCGGTATCAAATCTGCTGTTCACGTTTGGTCTTCCATTCTGGGCTTCGTACTTCATCCATGGTTGGACGTTTGGAGAGATTGGCTGTAAAGCGGTCAAGTTTCTGTTCTACGTGGGCTTTTACAGCAGCGTGATGTTCTTGACTCTCATGACCATTCAGCGCTACATGGCAGTGGTTCATCCTTTGTCCGACTGGGAGAAATGCAGATGCTTTTCAGTCGCTCCCATTATCATTTGGATGATGAGTGGAACGGCTGCGCTGGTTGGTGCACATTATAGCAAAATCCTGAAAGATCTGAACAACACATACTGTGAATATGAAAGTATTAAAGTCAAATCAGGCATTGCTTATTATCAGAACGCTTTTTTCTTCATTGCATTTATATTTGTGTGGTTTTGCTATGGCCGAATGTGTTGGGCGATAACAAAATATCACAATCGTGAGACACACAGAACTGTTAGACTAACATTTCTCATTGCACTGTTGCTATTTTTCGGTTGGACTCCATATAACATTGCTATGTTCCTGAGATCTCTGACTGATCAGAATATATATCCATTTACACTCTGTGAAGTAAGCAAAACAGTCGACTACGCATATTACATTTGCCGACTGATTGCTTTCTCACACTGTAGCGTCAATCCAGCATTGTTCATTTTTGCTGATGCAAATTTCTGCAAACATTTA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
partial protein sequence
frame:+1 300aa

MTDENTTYDYDDYYEDQLCRKDDVVKFGSIIIPLFFSIVVVMSCIGNILVLIILALYENLKSLTNVFIIHLSVSNLLFTFGLPFWASYFIHGWTFGEIGCKAVKFLFYVGFYSSVMFLTLMTIQRYMAVVHPLSDWEKCRCFSVAPIIIWMMSGTAALVGAHYSKILKDLNNTYCEYESIKVKSGIAYYQNAFFFIAFIFVWFCYGRMCWAITKYHNRETHRTVRLTFLIALLLFFGWTPYNIAMFLRSLTDQNIYPFTLCEVSKTVDYAYYICRLIAFSHCSVNPALFIFADANFCKHL
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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