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Analysis of genomic poly(A) sites
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Zebrafish
Danio rerio
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 1. Transcript Detail [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: ENSDARG00000041959 
Gene name: cxcr4b
Chromosome: chr9(+)
Gene locus: chr9(+):10917685-10919710
Gene description: chemokine (C-X-C motif), receptor 4b [Source:ZFIN;Acc:ZDB-GENE-010614-1 ]

Transcript id: ENSDART00000061499 
Transcript name: cxcr4b-001
Transcript locus: chr9(+):10917685-10919710

Start codon: 10917774
Stop codon: 10919185
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
10919200, 10919608, 10919706
polyA signals: TATAAA, ATTAAA, AATAAA

Notes:
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>ENSDART00000061499 1674bp 
GGACTATTTAAATGCTGCTGTGAGAGGAGGGCGGTTGACTAAAGTGTGGAGACTTATTGCGCCTTTTTGAGCACACCTATAAGAACAAAATGGAATTTTACGAT/AGCATCATTTTAGACAACAGCTCTGACTCCGGTTCTGGGGACTATGATGGAGAAGAACTTTGCGACCTCTCAGTCAGCAATGACTTCCAGAAGATCTTCCTCCCTACAGTATACGGGATTATATTTGTCCTAGGAATCATTGGCAATGGACTTGTGGTGCTTGTGATGGGCTTCCAGAAGAAGTCAAAGAACATGACAGACAAATACAGATTGCACCTTTCAATCGCAGACCTCCTGTTTGTCCTCACCCTGCCATTTTGGGCGGTCGATGCAGTCAGCGGGTGGCATTTTGGGGGATTTCTGTGCGTCACAGTCAACATGATCTACACTCTGAATTTGTACAGCAGCGTGCTCATCCTGGCCTTTATCAGCCTGGACCGCTATCTTGCAGTAGTACGTGCCACAAACAGCCAAAACTTAAGGAAATTGCTTGCGGGAAGGGTGATCTACATTGGAGTTTGGCTTCCAGCGACTTTTTTCACCATTCCTGATCTGGTGTTTGCAAAAATCCACAATTCGAGCATGGGTACCATCTGCGAGCTTACTTACCCGCAGGAGGCCAATGTCATTTGGAAAGCAGTTTTCCGCTTCCAGCACATCATCATTGGCTTTTTGCTGCCTGGTTTGATCATTTTGACCTGTTACTGTATCATCATCTCAAAACTGTCCAAGAACTCCAAGGGTCAGACTCTAAAGAGGAAGGCACTGAAGACCACCGTCATCCTCATCCTCTGCTTCTTCATCTGCTGGTTGCCTTACTGTGCCGGCATCCTGGTGGACGCTTTGACTATGCTGAACGTCATATCTCACAGCTGTTTCCTGGAACAGGGTCTGGAGAAATGGATCTTCTTTACGGAGGCGCTGGCATATTTCCACTGCTGTCTCAACCCTATCCTTTATGCTTTCCTAGGCGTCAGGTTCAGTAAATCTGCCCGTAACGCTCTGAGCATCAGCAGTAGATCCAGTCACAAGATGCTGACCAAGAAAAGGGGGCCTATATCATCTGTATCTACTGAATCAGAGTCGTCCAGTGCACTGACGAGTTAGTGTGTGCATATAAAAAAAGAAAAAAACTTTTCCACATGGATGATTAAGCTTATAAAAACAGGACTTTACTACAGTTTTTGTACATTGTAAAGTATTTTTGTGTTGATCTGATGACTTTTATTTTGTAAGACTTTTATTTTGTTTTTATTCAGCTTTAAAACATATTTTAAAATTTTTTTTTTTTTATGTACATGTTTGTACTTTTATTGCCAGACCTAAAGGCTGAGCCTTGACAAAGTCTGTATTCTTGCTGAAGGTCTTATCAGGAATGTTAGCATAGTCTTTTGTTTGATTCCCAACGCGTAGTGTAAATTATTTGTACATAGTTCATTGTTTGCCATTGTGAATGTGTGTATGTGTGCACTTAGCTTTTCCAACTCAGTTTAGCTTTTTTATATTTATTAAAATGGTAGCTCACACTGTAAAAACCTTTTTAAATGTTGAGTTTTGTAATTTAATTGTCACATTTTTGACGCATTTTAACTTCCATTTCATAATAAAACCTAAAAATCAACACTTTTAA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>ENSDART00000061499 cxcr4b-001 354aa
MEFYDSIILDNSSDSGSGDYDGEELCDLSVSNDFQKIFLPTVYGIIFVLGIIGNGLVVLVMGFQKKSKNMTDKYRLHLSIADLLFVLTLPFWAVDAVSGWHFGGFLCVTVNMIYTLNLYSSVLILAFISLDRYLAVVRATNSQNLRKLLAGRVIYIGVWLPATFFTIPDLVFAKIHNSSMGTICELTYPQEANVIWKAVFRFQHIIIGFLLPGLIILTCYCIIISKLSKNSKGQTLKRKALKTTVILILCFFICWLPYCAGILVDALTMLNVISHSCFLEQGLEKWIFFTEALAYFHCCLNPILYAFLGVRFSKSARNALSISSRSSHKMLTKKRGPISSVSTESESSSALTS*
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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