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Analysis of genomic poly(A) sites
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 Searching for Transcripts 
Branchiostoma belcheri
 Database: for
 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_300220F 
Gene name: TLR1
Chromosome: Sc0001090(+)
Gene locus: Sc0001090(+):21334-21765
Gene description:

Transcript id: Bb_300220F 
Transcript name: TLR1
Transcript locus: Sc0001090(+):21334-21765

Start codon: 21334
Stop codon: 21763
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0031224  Cellular Component  intrinsic to membrane 
 QuickGO:0007165  Biological Process  signal transduction 
 QuickGO:0004888  Molecular Function  transmembrane receptor activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR000157  18-127  3.1E-17  Toll/interleukin-1 receptor homology (TIR) domain
  KEGG annotation matched  
 KEGG Id Definition
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_300220F 432bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_300220F TLR1 144aa
Bb_300220F TLR1 ,.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

May 19, 2019. Last updated  
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