Home APASdb Home APAS Search APAS Browse BLAST Download Contact Us Help Citation
Analysis of genomic poly(A) sites
  Search For [ Example ] [ Tips ]
 Searching for Transcripts 
Branchiostoma belcheri
 Database: for
 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_277390F 
Gene name: casp8l1
Chromosome: Sc0000679(+)
Gene locus: Sc0000679(+):79505-82377
Gene description: caspase 8, apoptosis-related cysteine peptidase, like 1

Transcript id: Bb_277390F 
Transcript name: casp8l1
Transcript locus: Sc0000679(+):79505-82377

Start codon: 79505
Stop codon: 82375
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
82135, 82626
polyA signals: none, AATACA

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0007165  Biological Process  signal transduction 
 QuickGO:0005515  Molecular Function  protein binding 
 QuickGO:0006508  Biological Process  proteolysis 
 QuickGO:0004197  Molecular Function  cysteine-type endopeptidase activity 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0008234  Molecular Function  cysteine-type peptidase activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR000488  15-91  4.7E-11  Death domain
  PF00656  98-226  1.6E-19  Caspase domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K04396   caspase 
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_277390F 699bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_277390F casp8l1 233aa
Bb_277390F casp8l1 ,caspase 8, apoptosis-related cysteine peptidase, like 1.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

May 19, 2019. Last updated  
Copyright© Laboratory of Molecular Medicine, Sun Yat-Sen University, High Education Mega Center, Guangzhou 510006 China.