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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
 Database: for
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 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.
 

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_246980F 
Gene name: casp9
Chromosome: Sc0000405(+)
Gene locus: Sc0000405(+):121763-135389
Gene description: caspase 9, apoptosis-related cysteine protease

Transcript id: Bb_246980F 
Transcript name: casp9
Transcript locus: Sc0000405(+):121763-135389

Start codon: 121763
Stop codon: 135387
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0006508  Biological Process  proteolysis 
 QuickGO:0004197  Molecular Function  cysteine-type endopeptidase activity 
 QuickGO:0005622  Cellular Component  intracellular 
 QuickGO:0042981  Biological Process  regulation of apoptosis 
 QuickGO:0005515  Molecular Function  protein binding 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0008234  Molecular Function  cysteine-type peptidase activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR001315  69-150  2.5E-16  CARD domain
  PF00656  197-445  2.2E-47  Caspase domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K04399   caspase 
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_246980F 1350bp 
ATGTCCAGGCGACTCCACATGCACATGCTGCGAGACCCCCGAAGCGGCCGAGGCGCCGAGCCAGGCTGCCCGTGCTCCAATAACCCAGTACCGAGAGACCCTCTAGTCTCTGCAGCCATCCCTTGCGGGGCGGGGGGGCGGCCACAGACTTTCTGCAATCTGTGGTCTACTGCTCACAGAGTCAT/CATGGAGGATCATCACAGACAGATCCTGATAGAAAACCGAGTCAGGTTAGCCAAGGACATGAAGCCCAAATACCTGTACCCTATCCTGGTGGAGAAGAAGGTCTTCAATGATGACATGATAGAGGAGATAGAG/GCTGCTGGGACCAGGTTTGACCAGTCTAATGCCTTGTTAAGAGACCTCCCAGGAAGAGGAAAACATGCGTTCCAGAGTTTTGTAGAAGCTCTAGATGAAGCGGAACAGACAGACCTTGCAGACCTTCTGCGGAGTGGTCTAAAGGGAACAGGGAGCAGAGAACCAATCACAGTTCCTCAACAACCATCAG/ACAAACTAGATGCACATCCCTCAAGTGGACCACAGCCAAGTGACCCAACAAGG/GTGTACACAATGACTGCCCAACCTAGAGGCATAGCTCTAATCATCAACAACAAGACCTTCAGCGGCAGACTGAACACTAGAACAGGCACAGATGTGGACTGTAGCAACCTCACAAGACTCTTCACTTTCCTCAACTTTGATGTGAAAGTGGAACCCAACAAATCAGCAGCG/GAAATCCGTGAACTGTTACTGCATTATTCTCGAGTGGACCATGGCAGCTATGACTGTTTCATCCTGACCATCCTCAGTCATGGAGTAGAAGGGCATATATATGGTACAGATGAACAACTCCTGCCAGTCAAGGACATAACTGCCTTCTTCAACAATCGTTACTGCAAGACTTTAGTCGGCAAACCAAAGCTGTTCTTCCTGCAGGCTTGCAGAGGAG/ACAAAATGGACCGTGGTACAGATCAGACAGATGCAGGCACTGCGGAACCCCCATCCACACCTACACAGGAAGAGTTGTTAGGACAGATGTTGGAAGAGTCCATTGGCCTGGAGGAGACAGACGCTATGAGGGACACCCTGCCTACAGACTCAGACATGCTGCTGGCTTATGCCACTGTACCAG/GTTTTGTGTCTTGGAGAAACAGCCAGGATGGCAGCTGGTTTATACAAGCCTTGACTGAAGTCCTGCATCAGTACGCACCAGTGGAGGACCTGCTGTCTATGTTAACCATG/GTGAATGACAAGGTGGCCACCAGGTTCCAGTCAGCTGGGAAGAACAAACAGATGCCAGCACCTGTCACTATGCTGAGGAGGAAACTGTTCTTCAACCCAGGACAGTAA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_246980F casp9 450aa
MSRRLHMHMLRDPRSGRGAEPGCPCSNNPVPRDPLVSAAIPCGAGGRPQTFCNLWSTAHRVIMEDHHRQILIENRVRLAKDMKPKYLYPILVEKKVFNDDMIEEIEAAGTRFDQSNALLRDLPGRGKHAFQSFVEALDEAEQTDLADLLRSGLKGTGSREPITVPQQPSDKLDAHPSSGPQPSDPTRVYTMTAQPRGIALIINNKTFSGRLNTRTGTDVDCSNLTRLFTFLNFDVKVEPNKSAAEIRELLLHYSRVDHGSYDCFILTILSHGVEGHIYGTDEQLLPVKDITAFFNNRYCKTLVGKPKLFFLQACRGDKMDRGTDQTDAGTAEPPSTPTQEELLGQMLEESIGLEETDAMRDTLPTDSDMLLAYATVPGFVSWRNSQDGSWFIQALTEVLHQYAPVEDLLSMLTMVNDKVATRFQSAGKNKQMPAPVTMLRRKLFFNPGQ*
Bb_246980F casp9 ,caspase 9, apoptosis-related cysteine protease.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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