Home APASdb Home APAS Search APAS Browse BLAST Download Contact Us Help Citation
Analysis of genomic poly(A) sites
  Search For [ Example ] [ Tips ]
 Searching for Transcripts 
Branchiostoma belcheri
 Database: for
 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_231830F 
Gene name: TLR15
Chromosome: Sc0000319(+)
Gene locus: Sc0000319(+):69316-70083
Gene description: Toll-like receptor 15

Transcript id: Bb_231830F 
Transcript name: TLR15
Transcript locus: Sc0000319(+):69316-70083

Start codon: 69316
Stop codon: 70081
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals: AATACA

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0031224  Cellular Component  intrinsic to membrane 
 QuickGO:0007165  Biological Process  signal transduction 
 QuickGO:0004888  Molecular Function  transmembrane receptor activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR000157  38-124  3.4E-8  Toll/interleukin-1 receptor homology (TIR) domain
  KEGG annotation matched  
 KEGG Id Definition
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_231830F 483bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_231830F TLR15 161aa
Bb_231830F TLR15 ,Toll-like receptor 15.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

May 19, 2019. Last updated  
Copyright© Laboratory of Molecular Medicine, Sun Yat-Sen University, High Education Mega Center, Guangzhou 510006 China.