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Analysis of genomic poly(A) sites
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Branchiostoma belcheri
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 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_084600F 
Gene name:
Chromosome: Sc0000040(+)
Gene locus: Sc0000040(+):748551-750372
Gene description: caspase 9, apoptosis-related cysteine protease

Transcript id: Bb_084600F 
Transcript name:
Transcript locus: Sc0000040(+):748551-750372

Start codon: 748551
Stop codon: 750370
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0005622  Cellular Component  intracellular 
 QuickGO:0042981  Biological Process  regulation of apoptosis 
 QuickGO:0005515  Molecular Function  protein binding 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR001315  31-113  5.9E-11  CARD domain
  KEGG annotation matched  
 KEGG Id Definition
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_084600F 633bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_084600F  211aa
Bb_084600F ,caspase 9, apoptosis-related cysteine protease.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

May 27, 2016. last modified
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