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Analysis of genomic poly(A) sites
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 Searching for Transcripts 
Branchiostoma belcheri
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 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_064330R 
Gene name: CASP2
Chromosome: Sc0000024(-)
Gene locus: Sc0000024(-):1416230-1417308
Gene description: Caspase-2

Transcript id: Bb_064330R 
Transcript name: CASP2
Transcript locus: Sc0000024(-):1416230-1417308

Start codon: 1417306
Stop codon: 1416230
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0005622  Cellular Component  intracellular 
 QuickGO:0042981  Biological Process  regulation of apoptosis 
 QuickGO:0005515  Molecular Function  protein binding 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR001315  7-85  9.1E-15  CARD domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K02186   caspase 
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_064330R 531bp 
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_064330R CASP2 177aa
Bb_064330R CASP2 ,Caspase-2.
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

May 19, 2019. Last updated  
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