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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
 Database: for
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 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.
 

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_050100R 
Gene name: casp9
Chromosome: Sc0000016(-)
Gene locus: Sc0000016(-):1744487-1755582
Gene description: caspase 9, apoptosis-related cysteine protease

Transcript id: Bb_050100R 
Transcript name: casp9
Transcript locus: Sc0000016(-):1744487-1755582

Start codon: 1755580
Stop codon: 1744487
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0005622  Cellular Component  intracellular 
 QuickGO:0006464  Biological Process  protein modification process 
 QuickGO:0016881  Molecular Function  acid-amino acid ligase activity 
 QuickGO:0042981  Biological Process  regulation of apoptosis 
 QuickGO:0005515  Molecular Function  protein binding 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0005524  Molecular Function  ATP binding 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR001315  7-78  4.0E-9  CARD domain
  IPR002182  220-386  6.4E-7  NB-ARC
  IPR001315  844-925  5.1E-10  CARD domain
  KEGG annotation matched  
 KEGG Id Definition
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_050100R 5877bp 
ATGGAGGAAACACACAAGGAAAAGCTACGGAAGAACCACTGCCGGCTTAAGGGCACCATTCGTACGCAACACATCGCCGGCAGTCTTAAAGAAAAGGGCGTTTTGACTGACGATGATGTGGATAGAATCAACAACGAGGCCACCGATGAAAAACGGACCGAACGGCTGCTGTTTATCCTTGCTAGACGTTCGTCATCTGCCTTTGAAGCTTTCATACAGTCCCTGAGGGAGGTCCGAGAACAAGGAACATGCCTGTATGAAGACATCGTACAACTCCTGGAGGGAGCTGATCCTAACCAAG/GAACAGATGAAGATAAGAAGTGGATCCATGTTCGATCAAAGATCAAGGAGTATATAGCCAAACACCTGGACCCAAAGAAAGCCTGTGATGATCTCACTAAGTCCCATATCCTGACAGAAGAAGTAGCAGATATCATCCAAGAAGAAAAAGAGCCATTCGAAAGGGCCATGAGTCTGCTGAGTGTACTCCCCACCACTAAAGGACAAAGTGCCTTCCTTGCCCTTTGTAGGGTGTTGCATGCCCAGGGCCTTGAGGACATTGTATCTTTCCTTAATCGGGCATCAGTGGGTGATACTTTGAAACCAGTGACAAATGTTCCAGAGCCAGTTGAGTACTTTCTAGAAACAACTGATGCCACAAACGTGGAGCAGGCTCTTCAGAATTCGAATAACCCATCCACCATCGTTGTGGGTGGCATCCCCAAGTCTGGGAAAACCCAGATCACACGGAGGATAGCCAAGAAGTTCCGTCATCACCACCCCACAGCTGTGGTTTGGGCCCTAGATGGACAGAACAGGCAGACTCTCCTGGCAAGCATGAGAAAGCTCCTTGAAGCACTGAATGCTGAGGTGACAGATGAAGAAGACATCACTGAAGTAGACAAGTGTCTAGACCAAGCCCTACAGAACCGGGGGACTCCAGTCCTGCTGATCGTGGATGACCTTGAAGATGGAACCCTCCTGACTCCGACCTTGCTGAGAGAGAGGATCCAGTCTAGAGTGATGATTCCCACACCTCAAGAAGAGCTCCAGCTTCCAGCTGAGGCTGATGTTCTTCACATCTCAGTCAGTGGATTCAGCACTGAGGAAGTGGAAATGTTCTTTGAAGCAAACAAGCCAAAAAAGTACAAGCCAAACCAAGAGAACAAGCCAAATAAAGAGGACAAGCCAAAAGAAGAGTACCAACATGCATTTCTGGAGGCCCTGAATGAGGCCTTCAATCATCTCCCCCTGACTTGGGCTTCAGCTCTTCAATTCATGAAAATCAGCCACACCAGCCTGGAAAACTTTGTAGCACAGCTGAAGGAAGGAAATACTGTCATGGATATACAGGAAGAAATGAAGCG/GTGGATGCTGCCACATTATGAGAAGTTTGACCCTGCTGAAGAAAGCATGCAGCTGAGGTCAGCTATGTCCAAGCTGTCATCTACATGCTGGGAGTCCACAAGCAAGAAAAGTTCAGATG/GATTCCACTCATATGGCTATGTACTGCCAGCATCCTCAGCAAAGGAGAAGTCCAACCCTTCTTCACACACACAGAGCAATCCAGAAGTCGATGTGGACACTCTGCACCCTCAAGCACCTAACGATCAGCCAGTCAGCAGAGGAGACAGCACCATTCCCAAGCTTGGGAACAGCAAGGATAGGCATGAAGAAGAAAAACATGAAACTACTTTGGCTGAGTGTGAAGACAACGACAAGACATCTGATGGCACAGCAAGGGAAATCAACATAACACCTAGCACAGGCCCGACGTCAGCCCAATGTCAAGAAGTGCCGCCATGTCGTCAACTGAGTCAAGAAGAGCCAACTTCTGCAAGCAACATCCCCATCCCTGTCCTCGAGAGAGCTGTGGTTCCCCCTGACATAGATGGGATACAGACAACTCATGTTGCTACCCGAAGTACAGAACATGCAGACACTGTCCAAGAACGGGTGGGTGGCAGTCTTGAAAACCTGTCACATGAAACCTCAGCTGAAAGTGAGCACGGCAAAGTTTCAGAATATGCAGCAGCTCTGCCAGTGGAGGAACCCAGGCGTGGCAGCTATGGAGCTTCCACGGAAGCCCAAAGTTTTGGATCAAGTCATTGTACAATGACAGCAAATGCTCCTTCTTTACAGTCATCATTAGCAACTGCATCTCAAGTCAAGCAGTGCTCTCGTAAGCATGCACCTACCTCCGAAATGGACAGTACAAGTTCTGAAGAGGTTCCACTGACCACACCACCATCAGAAAGAGATGCTCCGGATCCAAACATTATGGCACAACAACAAGACATGGCTGCAGAGAACATTGACAACTCAACCCAGCTTAAAGGTCCATTGCCTACAGCCTGCATTGAAGGGGGGATTGAAGCTGAAGGTGCAGTTGGTGGAAGATGCTCTCCAAACCCATCGCAGGCTGCCGCACAGGATCAAACTACACCCAGCTGTCACAGTAGTGGTAGGACAAGCATCCCGTGTCGTGAAGTACAAAACGTGAGCAGGGCATTGTCGATCGGTAGCGGATGGGATCTGGTACGACGTCGCCGTACAGAAATTGCAAGGCGCATAAAGCCAGACCTTGCCTGCGAGTACTTGAGAAATGCAAACGTGCTGACAGAGGATGAGTGCAGAGGAATTGTTGAAGATGAAGACGAAGATGAAGACAAAGCCACAAGCCTACTCTGCATACTTCCAGCTAAAGGCCAAGAGGCACTCCTGGCATTCTGTGCAGCACTTAGAGATCAAAGCCTTGACGACATTGCAGCTCTGATTACTGCGTCTCAAGTCAGTGACATTCTAAGACCAATTACAAATGTTCCAGACCCAGTGAACAACTTTTTCCCAACACATGATGCTAACATTGTCCGTAGGGCTGTAGAGGCTGTAACTCAGCACATCATTCTCGTGTGCGAAGTTGCTGGGTCAGGCAAGACCCAGATCGCACGGTGGATAGCCAAGCAGTTCCTTCTTCACCACCCCACAGCTGTGGTTTGGGCCCTGGATGGACAGAACAGTCAGACTCTCCTGGCAAGCATGAGGAAGCTCCTTGAAGCACTGAATGCTCAAGTGACAGATGAAGAAGACATCACTAAAGTAGACGAGTGTCTAGACCGGGCCCTACAGAACCGGGGGACTCCAGTCCTGCGGATCGTGGATGACCTTGAAGATGGAACCCTCCTGACTCTAACTCCGACCTTGCTGAGAGAGAGGATCCAGTCCAGGGTGCTGATTCTCGCACATCAAGAAGAGCTCCAGCTTCCAGACGAAACCCCTTGGCCATGCAACTTAGAAGGTGGTTTTCAAACGTGGGAAGGAGTAAGGTTCTTTCAAACGGTTCTGGAGGAAGCACATTACCAGGTTAATGACTTGCAAGGCATAGCTGATGCATTTAATGGCCGCCCGTTGGGACTTGCAGCGGCTCTTGAATTCATGCGCAACACTCACACCAGCCCGGAACATTACCTGTTCCTGCTGAAGGAAGAACAAACTGCATGGATCCTCCAGGAAGAAGCCCAAAG/GTTTATGGCTCAGCATTACAACAAGTTCAACGAAAGAAATCTCCATCCAGTGTTCCAAGCTGCTCACAACAAAGTGAGAGGTCGAAGAGACACGTCCAAGACAGATGAAGATACAAAGGAGACTTGCCTTGAATCACCAAGTGAATACACTGATGATACAACTTCCAGTGCCCAAGATGAGCAAGATGAGTCCCCAGAAGGTCAAGAAGAAGAAGAAGAAAGGATGAGAGATGAAGGTGAAGGAGAAAGGCCAACAATTGGATCCCAAACCCAGTTAGAGGAGGCTGTCTCGGCATTGCAGCTTCAAGAAGAGGCAGTCGAAAGCCACTCTCCAGATGACCAGGATACACAGTCCTTGTCCAGTTCACTCGCAGCATTGGCAAGAAGTACCGATGGTTCAGAGCTTGAGGGAGCAGTCGGTGGCATCTTCTCTCCTCCATCACATACAACTTCAGAAGAAGAAGAACAGAAGATGAGAGATGAAACCCAGTCAGAGGCGGCTGCCTCCGCATTGTGGTTTCAGGAAGAGGCGATCGACAGCCACTCTTCAGATGACCAGCTTGAGGGAGCAGTCGGTGGCATCCTCTCTCCTCCTCGATCACGTACAGCTTCGGGTTTGCCTAGTGCTCTGGCCAGTATTCCTCCCCCGGGGCCCAACTATGCAAGACTCGCTGTACCTTGTCCTCTGGTACAACCTGCAACAAGGATTTTGTGCCAGATTCTGCGTTTGCCAGAACCAGACATTCAG/CAGGCTATGGAGAACCTGTCATGCTCTGGACCACCAGGACTTATTGTGCTTGAG/AATCAAGAGTTCCCGATGTTACCATCTGCTGGTCAGCTAGGCCAAGAACAGGCAATGG/GTTCTGTGCTTGTGTTCAGCCCTGCATCTGAACAGCTGATTGCTACAGAACAAGGCCAGCCACACCAGTTTCTTTGGGACATTGCCTCCAGGCCTGGCCTGACCAGAGAA/GTGTTTGAGCACGTCCTGGATTCCAGCTTCACCTTCCGGTACTATGTGCCCAGACGCCCTCCTGAGAGCCTGCCCTTTGTGCCACGTGATGCCAGGATTGGGATGGGAACTATCGTCCAGGCTGTGGCCGCATCAGAAGGGAACCATTGGGCCTGGAGGATCACATCCACACCAACTGGAATGGAGTTGGAATTT/TACATGGACCTAGAAAGCAGTCAGGGTGGTGCATGTGGCAACCAGCGCATGGCAGCACATG/TGGCGCCTGCTGGCCTAAACCCAGAACACAGGCTGAGGAGGAATCCACACATGCAGCAGAGTTCTTTCCCACCTCTTGACACAGT/CTCTCTTGAGGCAGAGCGTGTACGTCTACAGATGCATGTTGGACAAGGTTCGATTTCGGTAAGAATCCAGAGAGGTAATGGAGCTCAGGAGATCGTCAACCTGTACCTACAGATACCTTCAGCAGCAGCCTGTAGACTTGATGTACAGTTCATGGGAGAGTCTTCGGTAGATTGTGGGGGGCCTAGCAGGGAGCTCTTTGTGTTGGTTTGGAGATGGTTGTCAGAGAGATACCTTGAGAATGGTATCCCTCGTCAGAGCCCTGACTTGGAGCCAGCTACCTACGAATTCTGGCTGGCAATAGGGAGGTTTACCCTCTACATGTTTGTGCACTACAACTGTTTCCCAGCTGCTCACCTGGCAAGGTTTGTGGTGGAAGCAATGTTCAATGGTGCACCACAGTTGAACAGAGAGGACTGGCTCCCAGCTTTTCTGGACACTCTCCCAACCAACATAAGAACTCTTCTGCTTGAAAGCTGTTCTAGTGAAACAGCTTTTGAAAGGAACAGGGCTTCGCTAACTGAAGCTCTGGTGGCATGGGGGGTGTCCTCCTTTCCACGAAGCCCTGCCCACCTTTCACGGATGCTCCCAAAGATAGGGAGGTCTGTGTGTCTGGATGCGCCCTATGTGGCGCTGTGTGGCCTCATCAATGGCTTCCGTGAAGGGTGGCAGGCATGTGTAATGCCGGGGGATGTAGATAGGCTTATCCGACAGCATAGCCCCCCTAGCGCTGGTGACATCATCCCAGCTTTGGATATTGAAACAAGCAAGGTCGATTCTTACACTGGCCGCAGGATGGAAGGGTACGTGCATCGATGGCTCCAAAATGCCAGTCCGACTATGCTACAGCAGTTCTTGATCACTGTAACTAGCTATGATCAGTTGACTAACCAAAACATCACCATCGTTTTGGATCCAGACTATCCCAACTGTGTCATCTCTACATGTACCCAGACATTGCCTGTGCCAGTGGTTGAGACCTATGAGGGGTTCTGCACCTACATGACAGGAGCTTTGTCTGGTGACATATTCAACCATGTCTGA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_050100R casp9 1959aa
MEETHKEKLRKNHCRLKGTIRTQHIAGSLKEKGVLTDDDVDRINNEATDEKRTERLLFILARRSSSAFEAFIQSLREVREQGTCLYEDIVQLLEGADPNQGTDEDKKWIHVRSKIKEYIAKHLDPKKACDDLTKSHILTEEVADIIQEEKEPFERAMSLLSVLPTTKGQSAFLALCRVLHAQGLEDIVSFLNRASVGDTLKPVTNVPEPVEYFLETTDATNVEQALQNSNNPSTIVVGGIPKSGKTQITRRIAKKFRHHHPTAVVWALDGQNRQTLLASMRKLLEALNAEVTDEEDITEVDKCLDQALQNRGTPVLLIVDDLEDGTLLTPTLLRERIQSRVMIPTPQEELQLPAEADVLHISVSGFSTEEVEMFFEANKPKKYKPNQENKPNKEDKPKEEYQHAFLEALNEAFNHLPLTWASALQFMKISHTSLENFVAQLKEGNTVMDIQEEMKRWMLPHYEKFDPAEESMQLRSAMSKLSSTCWESTSKKSSDGFHSYGYVLPASSAKEKSNPSSHTQSNPEVDVDTLHPQAPNDQPVSRGDSTIPKLGNSKDRHEEEKHETTLAECEDNDKTSDGTAREINITPSTGPTSAQCQEVPPCRQLSQEEPTSASNIPIPVLERAVVPPDIDGIQTTHVATRSTEHADTVQERVGGSLENLSHETSAESEHGKVSEYAAALPVEEPRRGSYGASTEAQSFGSSHCTMTANAPSLQSSLATASQVKQCSRKHAPTSEMDSTSSEEVPLTTPPSERDAPDPNIMAQQQDMAAENIDNSTQLKGPLPTACIEGGIEAEGAVGGRCSPNPSQAAAQDQTTPSCHSSGRTSIPCREVQNVSRALSIGSGWDLVRRRRTEIARRIKPDLACEYLRNANVLTEDECRGIVEDEDEDEDKATSLLCILPAKGQEALLAFCAALRDQSLDDIAALITASQVSDILRPITNVPDPVNNFFPTHDANIVRRAVEAVTQHIILVCEVAGSGKTQIARWIAKQFLLHHPTAVVWALDGQNSQTLLASMRKLLEALNAQVTDEEDITKVDECLDRALQNRGTPVLRIVDDLEDGTLLTLTPTLLRERIQSRVLILAHQEELQLPDETPWPCNLEGGFQTWEGVRFFQTVLEEAHYQVNDLQGIADAFNGRPLGLAAALEFMRNTHTSPEHYLFLLKEEQTAWILQEEAQRFMAQHYNKFNERNLHPVFQAAHNKVRGRRDTSKTDEDTKETCLESPSEYTDDTTSSAQDEQDESPEGQEEEEERMRDEGEGERPTIGSQTQLEEAVSALQLQEEAVESHSPDDQDTQSLSSSLAALARSTDGSELEGAVGGIFSPPSHTTSEEEEQKMRDETQSEAAASALWFQEEAIDSHSSDDQLEGAVGGILSPPRSRTASGLPSALASIPPPGPNYARLAVPCPLVQPATRILCQILRLPEPDIQQAMENLSCSGPPGLIVLENQEFPMLPSAGQLGQEQAMGSVLVFSPASEQLIATEQGQPHQFLWDIASRPGLTREVFEHVLDSSFTFRYYVPRRPPESLPFVPRDARIGMGTIVQAVAASEGNHWAWRITSTPTGMELEFYMDLESSQGGACGNQRMAAHVAPAGLNPEHRLRRNPHMQQSSFPPLDTVSLEAERVRLQMHVGQGSISVRIQRGNGAQEIVNLYLQIPSAAACRLDVQFMGESSVDCGGPSRELFVLVWRWLSERYLENGIPRQSPDLEPATYEFWLAIGRFTLYMFVHYNCFPAAHLARFVVEAMFNGAPQLNREDWLPAFLDTLPTNIRTLLLESCSSETAFERNRASLTEALVAWGVSSFPRSPAHLSRMLPKIGRSVCLDAPYVALCGLINGFREGWQACVMPGDVDRLIRQHSPPSAGDIIPALDIETSKVDSYTGRRMEGYVHRWLQNASPTMLQQFLITVTSYDQLTNQNITIVLDPDYPNCVISTCTQTLPVPVVETYEGFCTYMTGALSGDIFNHV*
Bb_050100R casp9 ,caspase 9, apoptosis-related cysteine protease.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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