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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
 Database: for
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 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.
 

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_049630F 
Gene name: Tlr2
Chromosome: Sc0000016(+)
Gene locus: Sc0000016(+):988872-993328
Gene description: toll-like receptor 2

Transcript id: Bb_049630F 
Transcript name: Tlr2
Transcript locus: Sc0000016(+):988872-993328

Start codon: 988872
Stop codon: 993326
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
994088
polyA signals: AATAAA

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0031224  Cellular Component  intrinsic to membrane 
 QuickGO:0007165  Biological Process  signal transduction 
 QuickGO:0004888  Molecular Function  transmembrane receptor activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  IPR000157  84-180  1.6E-19  Toll/interleukin-1 receptor homology (TIR) domain
  IPR028054  235-545  1.2E-24  Protein of unknown function DUF4481
  KEGG annotation matched  
 KEGG Id Definition
 KO:K10159   toll-like receptor 
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_049630F 1686bp 
ATGAGTGACGCCAGTACTGTAGCACAGGAACTTGAGGAAGACAACGCTGCCCAGGATTTGGGGGCCAATCCAGGCGACACACAGCCACATGCTTCGACAAAGTCAGGACAAAGTAGGAGTAGCGGGGGACTAGAATTTCACTCCCCAGCCGAGAGTGAAGAAGACGATACCGACAGCGACGGCAGTAGCAACAACGGTCACGGTACGGCGGCAGTAGGAATAGCGCCCCCTCTCGGCCAACATGAGAAGTACCACGTTTTCTTCTGCTACAGCAGCGCCGATGCACCATGGGTAAAAGATACGATCCAGAAGCTCGAGTCAGATGAGCTCGGGTTCAAGTGTTGTTTCCACGAGCGCGATTTTCTCCCAGGAGTGGCCATCATCGATAACATCGTCCGCTCCATCCACGAGAGCCAGAAGACCGTCTTCGTACTCTCGCGAGATTTCGTCGAGAGCAGGTGGTGCAATTTCGAACGGCAGGTCGTCATGGGTGCCAACCTCAGAGAAGAAAACAAAAAGGTCATACCCGTCATGCTTCGCGAATGTGACCTGCCGGAGTTCCTTCAACACATGACGTACTTGGAAGTGTGGACTGCGTACTTTTTCGACAGATTCATTGGTGCATTGAAAG/AATCTACTTCATCTGATCCAGGCAGTCAGTCGGATTCCCTCTCACCATTCACCTACAACCCCA/ACTTCAACAATGGCCAACAGTTGTTGAAGCTTGAGGCGACGGCTGCCTGTTGCCCACCCTGTGCTCAGTTTGACGATCAGATTGTTCCAACTGAACTGACGTCCAAGGGCATTCGG/ATACCGAGAAATGATTACCAGGAGGCCATCGGCAAACTGATGGAGACGGTCAAGATGTCAAGGTTCAACTTCTTCTCTAGCGAAGCCTTCTTCTGGATACCGACTTTCATCATCATATCTCCGATATTAGGGATTTTCCTGGCACTATTCATATTGGCCCTCCAATTCCCAATCCAAGAAGGCGATGTCGTCATTTCCACAGATTTTGATGACAGTTCCATGTACTTCTACTTGTCTGTAACATTAGTATTTCTACAAGTGGTTCTGGTGTTACGCTGTGTATCACGTATCAGG/GTTGACAGGGCCATGAGAAGGACTCTGGTAGAGGTGAACACCATTCTTGCCAAGTCCCACATCCTTGCAACAGTGACAGGCCGGTGCATATGTTATCCAGTGGCTGTT/CTCCATTTTGTGTACTTCGAGAGAGGTTCTTGTCTG/ATGAAATTAGTAGAAGACCTGATGGCGAGGAGCAGATGTGAGGCGGGCATGACAGGCCACACTAAGGCAGACTTTACAGACCCATTGTCATCATCAAACATGGACGATCCACCGCCG/GATTTCGCGGGTGCGTCGTCGTCTTGTGTTGTACCCATAGACGTGGATGATGCCGCTCCTCTTTTGTCAGAAGCAGGTGGAGACGCAGATTTCAACGGAGGCAACTCATCACAAACCTCCCGCATGTCTGAACTGAAA/GCTGAAGCGGAGGCCCTGCTGCTGAACTACAGTGAGCTGTACGTGCGGCTCCTGGTCACCAAGACCCTCCCGCAGCCCCGCCGGTCCCGCGGGCACACACAGCAGGGCGCCTGTCTCTGTCAGCTGGTGGAGCTGCACCAGTTCGGCTGGAAACTGGACCGGGAAGAAACCTCGGTCGTCTGA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_049630F Tlr2 562aa
MSDASTVAQELEEDNAAQDLGANPGDTQPHASTKSGQSRSSGGLEFHSPAESEEDDTDSDGSSNNGHGTAAVGIAPPLGQHEKYHVFFCYSSADAPWVKDTIQKLESDELGFKCCFHERDFLPGVAIIDNIVRSIHESQKTVFVLSRDFVESRWCNFERQVVMGANLREENKKVIPVMLRECDLPEFLQHMTYLEVWTAYFFDRFIGALKESTSSDPGSQSDSLSPFTYNPNFNNGQQLLKLEATAACCPPCAQFDDQIVPTELTSKGIRIPRNDYQEAIGKLMETVKMSRFNFFSSEAFFWIPTFIIISPILGIFLALFILALQFPIQEGDVVISTDFDDSSMYFYLSVTLVFLQVVLVLRCVSRIRVDRAMRRTLVEVNTILAKSHILATVTGRCICYPVAVLHFVYFERGSCLMKLVEDLMARSRCEAGMTGHTKADFTDPLSSSNMDDPPPDFAGASSSCVVPIDVDDAAPLLSEAGGDADFNGGNSSQTSRMSELKAEAEALLLNYSELYVRLLVTKTLPQPRRSRGHTQQGACLCQLVELHQFGWKLDREETSVV*
Bb_049630F Tlr2 ,toll-like receptor 2.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 27, 2016. last modified
 
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