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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
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 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_030730R 
Gene name: CASP3
Chromosome: Sc0000007(-)
Gene locus: Sc0000007(-):2320546-2324292
Gene description: Caspase-3

Transcript id: Bb_030730R 
Transcript name: CASP3
Transcript locus: Sc0000007(-):2320546-2324292

Start codon: 2324290
Stop codon: 2320546
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0006508  Biological Process  proteolysis 
 QuickGO:0004197  Molecular Function  cysteine-type endopeptidase activity 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0008234  Molecular Function  cysteine-type peptidase activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  PF00656  125-362  5.0E-53  Caspase domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K02187   caspase 
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_030730R 1128bp 
ATGTTTCGTCTCGTGTTTCGTATCGCCGCCAAACCTACCTCTGCGGATGGCTCCGTGTGCACACGGCTAACACGACAATTAAACACTGGATCAAGACAAGGCCAAG/CACACGGGATCTGCACAGGACAATGTCGGTCCAAGTCACAAACTACATCCAAACTGGCAGCGCTGGCTGGGTTTGCGGGGGTCGGCATCATCGCAGGAGAAGTCTGGATCAGCAATAAGAGGAAAAGTGACAACGCGCTGGCAGCTACATATCTGAAAGAATTAAAAG/AAAGCCACTCCGCATCTTCACAAGTTCCCAGCGAGGACAAGGAAGCAATCACAGACGAAGAGAAAGCTCTAAGATATGACATGTCTCATCCCAGAAGGGGGTTGGCCGTTATCATCAACAACAA/ACACTTTAACGCCAGTACCCAGATGGAGATGCGGGAGGGGTCAGAGGTGGACCTGGAGAACCTGTCGCAGGTGCTGCTGGATCTGGACTTCGAAGTCCGCGTGTACACCGACCTGACGTGCAAGCAGATGAGAAGAGTTCTCCGACAGG/TTGCTGAGGAGGACCACGGCGACTCGGACTGCCTGCTGGTGTCCATCATGAGTCACGGGTACAAGGGTGAGCAGGTGTACGGTGTGGACGGGCTGGTCAACGTCGACAAACTCTCCGCCTACTTCCGGGGCGAGAACTGCAAAACTCTCATCGGCAAACCCAAACTCTTCGTCATTCAG/GCATGTCAGGGTGAGAGGCTGATGGAGGGAGTGACGCTGGCGTCCACGTCCTCAGACAGTGACGTCACCATCCGCCCGCAGTCACAGACTCTACCGTCTGGGGCGGACTTCCTGTACTTCTACTCTGTGTCGCAAG/GATATTACTCGTGGAGAAACATCCGGCAGGGCTCCTGGCTGATTCAGGCCCTGTGCAAGGTGCTTCGCGAGGATGGATACTCTGGGCTCGAGATCATGCAGCTCTTGACCAAGGTCAACAGACAG/GTTGCGACCGAGTTCGAATCCTTGTCCCCAGATGAGTCATTCAACAAGAAGAAACAGATCCCGTGTATCGTGTCCATGCTGACTAAGGAACTCTACTTCACGCAGAAGTTATCAACTCTAGTTAAAACAGAATCCATCTGA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_030730R CASP3 376aa
MFRLVFRIAAKPTSADGSVCTRLTRQLNTGSRQGQAHGICTGQCRSKSQTTSKLAALAGFAGVGIIAGEVWISNKRKSDNALAATYLKELKESHSASSQVPSEDKEAITDEEKALRYDMSHPRRGLAVIINNKHFNASTQMEMREGSEVDLENLSQVLLDLDFEVRVYTDLTCKQMRRVLRQVAEEDHGDSDCLLVSIMSHGYKGEQVYGVDGLVNVDKLSAYFRGENCKTLIGKPKLFVIQACQGERLMEGVTLASTSSDSDVTIRPQSQTLPSGADFLYFYSVSQGYYSWRNIRQGSWLIQALCKVLREDGYSGLEIMQLLTKVNRQVATEFESLSPDESFNKKKQIPCIVSMLTKELYFTQKLSTLVKTESI*
Bb_030730R CASP3 ,Caspase-3.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 27, 2016. last modified
 
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