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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
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 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_008400R 
Gene name: CASP10
Chromosome: Sc0000001(-)
Gene locus: Sc0000001(-):3186009-3192797
Gene description: Caspase-10

Transcript id: Bb_008400R 
Transcript name: CASP10
Transcript locus: Sc0000001(-):3186009-3192797

Start codon: 3192795
Stop codon: 3186009
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0006508  Biological Process  proteolysis 
 QuickGO:0004197  Molecular Function  cysteine-type endopeptidase activity 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0008234  Molecular Function  cysteine-type peptidase activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  PF00656  584-774  5.7E-11  Caspase domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K04400   caspase 
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_008400R 2493bp 
ATGACTTTTCGTTGCGTCTTTGATGTAAACTACATGACAGAACACTACTCAAATCGGGCTTCGGTCAGTATACAGTGTTCGCTCTATCGTAGTGCTTGTGTCCAGTATTTTACCAAAG/TTGATTTTTCCCCACACAACGTAAAGCATTATGTCAACGCCGTCAGTTTACATTCAAGACGATATACAGGAATAGCTTATTTCAAAACAAGATTAGCCCATGACATAAG/TCGCCATTACCACACAAAGGCCCCCAATGGTTCAGATATGATCGATGTTAGGTATAAACAGAAAATCCCAACAACCTACTACGCTCGCGAG/ACCTCCGATGAGAAAATGGCGGCTGCGCCACGTGACCTGAGGGACGACCTGATGGAGGCCCAGGAGCACGCCGCGCGGTGCATGCTGGTCCAGCGTGAAAAGCAGGCCGATGAAGGACTCCTCATGGCACTATCAG/ATGCCCTGAGTCGGATCAGAGAACGCCGGGCACGAGAGCAGGTCCGCCTTGAAACCGTCACGTCCATCAAACAGCTGCACGAGTGGTACGAGTACGGCAAAGCCATACTGAAGCACGGGGACGGACTGGAAGCCATCTTACGGTTCCGAAACGAGCTCAAATGGCTGAAGAAATTCTACCGCTCCTTACTCGAGCATATCTACAAGTATCTTGAGAAATACTTCTGCATAGAACGTCACACGGACCACAATCTTCAAGGTGAACTAAACAGAATCATGGTCGAAACGAAGGATGTGAAAACTCTGCTGGATCAGCATTTTGTCGATGCGAATGTGCTGCGTCCGAATGTGCAGGATAAGGACCCTGTTGTCAGCCTCGTGCCCTTCCTGTACCTGGAGTTACGTCATCTGATCGACCTTTTCCATGAATGGAGAGTTCATGTCAG/ATTTAGAAACAAGCTTGAGGAGGTTGAGCAGCGCCGCTGGTTGGTCAGACGACAGGAGATGCAAAGGCGTCACGTGATCGATGACATCAGCGAGAGGATCGTCGCAGTCACGCGAGAAATGGCGGATCGCGAGACGAGACTACGTCACAACATTTCCGGATTGGAGAGAGTAAAAGTAGTCATTTCTCAAGAGAAGG/GGATTCATGACGAAATTGAAGTGCTGGAACTGGAGTTAGATGGGTTGCTATGGGAACGGACGAAGCTTCAGAAAATGGCGGTCGACATGAAAGACGAACTCCGGAACATCCCGAACAAGCGAGACTACAAGCGGGACAAGATAAAGAACGAACAGAGAAAAGCAGTCGCCGATTTTGATAAAAACCAAGCGAGGATCAACGACAAAAGAAGAAAACTTGAGGAAAAATACAGAGTCAAAGACTGGTACGAGAAATCCGAGCACAACCTGGTCAGCATCACATTGGAGATTGCAGACGACAGGAGGAGGATTGCAGGTCTCGCGAGGCTGCGCGAGACTTTGGAGCGAGAGCGAGACAGTGCGAGAAAGAGGTTGCAAGATCTGAATGCGTCTGCTACGAATGTGGAGCTGAAGTTACACTCGCTTCACACCGATTACCTGTACGCTATGAGGAGCGTGGAACAGGTCAGACGAATCCAATGGCAAGTGGACGGAGGGGTGGACTCGGAGAGGGGCGTGAGGGTGAGGCCAAACGAAGTGCGGGTCAGTGACCTTAAAAAG/AGAGGGGAGCCTTGGTACGACATGACGTCACACCCCCGCGGCAGGGTCATTGTCATCAATAATGACTCCCACTGCACCATGTATGACGACTATCGTGACGTCAGACATCTGACAGACGTATTTGAACAGCTGGGCTTTACCGTGACGCTAGAAGAGAACATCACTGCCGCG/GAGCTGGAGAGCCAGGCGTCCCGGTTAGCGGAGGAGGACACCTCGGGTAGCGCGTTGGTGGTGGTGGTGCTGAGCCCGGGACATGGCCGCCGTCTGCACGGCTCAGATAAACACGGCATCTCACACCGGGACTTCATGGCACAATTTCAG/AATGTAGTTGGCAATAACATGAAGGGGAAGCCGACGCTGTTCCTATTCATGGACACCCCTTCCGGAAATGACGTCACGACCACCAATGACGACGACTTTTACAGCAGATTCTACGAACCTGATTGGCCGACGAACGACGAGGACCAAGATGGCGGAACTGAGCATGACGGGACGTCTAAAAGTGACGTATTCGTCGCGTCATGTCCATCCTATGGGTATCTCTCGTGCAAGGACTTCGTACAAGGCACTTTAGCCGCACAAACATTTGTCAAATATCTCACACATTTTGCGGCAACGGAAGATTTTACGACAATACTCCAGCGCATACGGCGCGAGCTGCACACGCGCAGTAGCGTCAAGGCGTCAGCTGTTTGCGATGGCAACTGCGCAGACGCAGAAGACGAAGAGAACCCGCAAG/ACTCCAAATGTAATGCAATAGTGCGAAATATCGTCTGTGTATTTGTCAATGAAGACCCTGTTACATGTTCTGGTACAGTATCAAGACATCCAAGTTGA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_008400R CASP10 831aa
MTFRCVFDVNYMTEHYSNRASVSIQCSLYRSACVQYFTKVDFSPHNVKHYVNAVSLHSRRYTGIAYFKTRLAHDISRHYHTKAPNGSDMIDVRYKQKIPTTYYARETSDEKMAAAPRDLRDDLMEAQEHAARCMLVQREKQADEGLLMALSDALSRIRERRAREQVRLETVTSIKQLHEWYEYGKAILKHGDGLEAILRFRNELKWLKKFYRSLLEHIYKYLEKYFCIERHTDHNLQGELNRIMVETKDVKTLLDQHFVDANVLRPNVQDKDPVVSLVPFLYLELRHLIDLFHEWRVHVRFRNKLEEVEQRRWLVRRQEMQRRHVIDDISERIVAVTREMADRETRLRHNISGLERVKVVISQEKGIHDEIEVLELELDGLLWERTKLQKMAVDMKDELRNIPNKRDYKRDKIKNEQRKAVADFDKNQARINDKRRKLEEKYRVKDWYEKSEHNLVSITLEIADDRRRIAGLARLRETLERERDSARKRLQDLNASATNVELKLHSLHTDYLYAMRSVEQVRRIQWQVDGGVDSERGVRVRPNEVRVSDLKKRGEPWYDMTSHPRGRVIVINNDSHCTMYDDYRDVRHLTDVFEQLGFTVTLEENITAAELESQASRLAEEDTSGSALVVVVLSPGHGRRLHGSDKHGISHRDFMAQFQNVVGNNMKGKPTLFLFMDTPSGNDVTTTNDDDFYSRFYEPDWPTNDEDQDGGTEHDGTSKSDVFVASCPSYGYLSCKDFVQGTLAAQTFVKYLTHFAATEDFTTILQRIRRELHTRSSVKASAVCDGNCADAEDEENPQDSKCNAIVRNIVCVFVNEDPVTCSGTVSRHPS*
Bb_008400R CASP10 ,Caspase-10.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 19, 2019. Last updated  
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