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Analysis of genomic poly(A) sites
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Lancelet
Branchiostoma belcheri
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 Searching examples: ssr4, ssr, hox, TLR, caspase, also Bb_073760F are available for query.
 

 1. Transcript Detail Expression Pattern Orthologs among Species [Help]   
 Transcript Mapping
 Exons Structure     

Gene id: Bb_008390R 
Gene name: casp3a
Chromosome: Sc0000001(-)
Gene locus: Sc0000001(-):3175568-3181522
Gene description: caspase 3, apoptosis-related cysteine protease a

Transcript id: Bb_008390R 
Transcript name: casp3a
Transcript locus: Sc0000001(-):3175568-3181522

Start codon: 3181520
Stop codon: 3175568
Alternative polyA sites: Mapped to the searched transcript (containing the 5' and 3' flanking region of 1kb).
polyA signals:

Notes:
  GO annotation matched    
 GO Id Ontology Term
 QuickGO:0006508  Biological Process  proteolysis 
 QuickGO:0004197  Molecular Function  cysteine-type endopeptidase activity 
 QuickGO:0006915  Biological Process  apoptosis 
 QuickGO:0008234  Molecular Function  cysteine-type peptidase activity 
  InterPro protein Families and Domains annotation matched 
 InterPro/Pfam Id  Locus  E-value  Description
  PF00656  491-726  5.9E-17  Caspase domain
  KEGG annotation matched  
 KEGG Id Definition
 KO:K02187   caspase 
mRNA/CDS:
  mRNA/CDS sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_008390R 2286bp 
ATGTCGTCTTTAATGGATTCGTTCAACGGTGACTTGTCACCAAGAAGTCACTCCGTAGCAAACTAT/ACTAAGAAGGAAGCTATGGAGGACGCATCAGACGAGGAGAGGGGAGTTCTGATGCAGATGCAGGAACACTTCTACAGACAGGCTCTCATGACAGAGAAAGCCAAGTACGACAAG/TTTTTCCGAGAGGAGGTAAGTCGAATGCTGGGGATAGCGGCCCAGCGCAGACGACAATATGGCCTCCCGAAGAAGAGCCACGAGTCATGTGACACCATCAAGGCACTGCGCGAGTGGATCACGTGGGAAACTAAGCGAATCAGCATCCACCGCGATAACGAGGACGAGAATGACGTCGTTAGAAATCTGCGCATGCTCCTGAACAGGATCGACTACGTCAAGATCCTTTTTTCAGACATCAAGCGGTATTTGATCACGCCCCTTCTCACGTACTTTGCCATCAGCGCTGAGTTCAACGCTGAACTCTTAACAGTTAGAAGAGACCTCATGAAGGGGAAGCAACAATGTGAGAAGCTTTTGTCAGACGACTACAAGCAGATCACAGACGGGCAAGCGTTCGAAGCCATACCAAACGAGAAGCGATTTCCCGTTCTAGTGGTCGTACCGAAAGCCATAGCCATCCTCTGCCTCATCACCGACCTCACCACAAAATGGCGGATACATTCCCAGTTCGAAAACAACCTGGACAACTTGTGGACTCGTCGTGCCTCCTTGGACACCCCTCAGATGCTGCAGTCAAAGAAGGAAGAAATCACACAACTCGAGAACAGCGTGCAGACGGCTCAGAGGGACTTCGACGAAATCTCGCGAGACGTTCGAGAGTTTGAACGAGAGGCGAAGGATGCCCAGTTCAGCAGCCAGTACTCGGGTACGTCTGACAAGTTAGAACAGGCAGAGCAGTTGGTGAACAAGCTGCTACAAGAAGAAAGAAAACTTCAGAGAAAGATAAAGAGCATGACAGAGCGACTACGATCCACTAGAGTAGGAGCTGTCAAAATCAGAGACATGCTCAGCCAGTCCAAGGAACAACTTGCCAAAACGCAAGAAGCTCTTCAGACAAGATCAGAGGAGTTTGAAGAGTTGTCGTCAAGAAAGAAAGAATTCGACGACTCGGAACAGGAGTTCCTGCGAGGAGGCTTCGACCAAAGAAGAGTAGAACTCATGCAGATGAAGGAGAGACAGAGACATGCCAAGAAGAAGTTACG/TCAACTTGAGGATCGGCGTGAGCGGATAAAGCAGGATTTCCGGGCGGTGCGTGAGGAGCTAATCTCTCTGGACACCGAGCACGACAAGGTCACGCAGGATTACGACTACGTCAAGGGCATCATGGACGCCTCACTCAAGTCACTCTGGAGAG/ATCAGTCTCCCGATGCCATCTCCGTTCTACCCAACAGGATGACACGAGAGAAACTAAGAACG/GTACCCATCTATGACATCCACCAGCCGAAGGGCATCTGCCTGATTATCTCTAACGAGATCGTGCGGAACAAGGCGAAGTGCCGACATAGCGTGAGGAAAGACCTAAGGGGCCTTGCCAGCCTGTTCAGACAGTTTGGCTACCAGATCGTTGTCAAGGAGAATCTGACGTCATCG/CAAATCATCGAAGCGCTGATCTCGCTGTCTGACGAGTACCATGAGTTCAGCGGGCGATACAGCTCGGTAGTTGTGGTGATCATGGCGCATGGAGACGCCTCGGGTAGACTGGTGGGCACGGATCTGCAGCCTGTGTCAGTCAACGAGCTGACGGCACACTTCCAGCACACACGCTGTCCCAGTCTCATGGGCCAGCCCAAGATGTTCTTCATTCAG/ACGTGCATGGAGCTTGTTCTGGAGGCGCAGCGACTGGGCAACCCCGACGTACCGGGGGACATCTCACCGAGACGGAACGGCTTCAAGTCAACCTTCAGTCTCAACAGCTTCGGTCCGCTCGTCGTGACACCCGAAGAACCGAGACTACCCGACAACAGTGACTTCTTCGTGGCACAAGCTACCGTCTTTCCTCCTCTAACCACCCCCATTCTAACCTCCTCCCTCATCGTACAAGACAGAAGCTGTTCGCCTGAGAACTGTTTCCTGAACGCCATTGTTCGCATCTTCGCCGAGTACGCATGCGTGGAAGATTTGCTGAGCATGATGGGAAGGGTAGAGGACTGCGTTGCTAGCACGGGCAGCCATGACAGTTACACCGGACGTAGCTCACCACTACAGATGTCGTACGTCAAACATACGTTAGGAAAACAGATCTTCTTTATGCCAGGCATGTAG
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
>Bb_008390R casp3a 762aa
MSSLMDSFNGDLSPRSHSVANYTKKEAMEDASDEERGVLMQMQEHFYRQALMTEKAKYDKFFREEVSRMLGIAAQRRRQYGLPKKSHESCDTIKALREWITWETKRISIHRDNEDENDVVRNLRMLLNRIDYVKILFSDIKRYLITPLLTYFAISAEFNAELLTVRRDLMKGKQQCEKLLSDDYKQITDGQAFEAIPNEKRFPVLVVVPKAIAILCLITDLTTKWRIHSQFENNLDNLWTRRASLDTPQMLQSKKEEITQLENSVQTAQRDFDEISRDVREFEREAKDAQFSSQYSGTSDKLEQAEQLVNKLLQEERKLQRKIKSMTERLRSTRVGAVKIRDMLSQSKEQLAKTQEALQTRSEEFEELSSRKKEFDDSEQEFLRGGFDQRRVELMQMKERQRHAKKKLRQLEDRRERIKQDFRAVREELISLDTEHDKVTQDYDYVKGIMDASLKSLWRDQSPDAISVLPNRMTREKLRTVPIYDIHQPKGICLIISNEIVRNKAKCRHSVRKDLRGLASLFRQFGYQIVVKENLTSSQIIEALISLSDEYHEFSGRYSSVVVVIMAHGDASGRLVGTDLQPVSVNELTAHFQHTRCPSLMGQPKMFFIQTCMELVLEAQRLGNPDVPGDISPRRNGFKSTFSLNSFGPLVVTPEEPRLPDNSDFFVAQATVFPPLTTPILTSSLIVQDRSCSPENCFLNAIVRIFAEYACVEDLLSMMGRVEDCVASTGSHDSYTGRSSPLQMSYVKHTLGKQIFFMPGM*
Bb_008390R casp3a ,caspase 3, apoptosis-related cysteine protease a.
 
 
 
Citation:
(Leiming You, et al. Nucleic Acids Res. 2015, 43: D59-D67) APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

 
May 27, 2016. last modified
 
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