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Lancelet
Branchiostoma belcheri
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 Tips for searching: search using a ID, gene name, symbols or description variable in publications and databases.
 Searching examples: IFT27, IFT, TLR, caspase, also Bb_063970F are available for query.
 
Annotated genes matched the keyword: 'Bb_063970F'    total: 1      *click 'View'-labled button to detail genes in a new page [Help]  

 Detail *   id   gene_id/transcript_id (Link other resources)   gene name (sympol)  locus (link view in Gbrowse)   descriptions & notes 
1 Bb_063970F IFT27  Sc0000024(+):1168833-1170130 Intraflagellar transport protein 27 homolog 
*click 'View'-labled button to detail the corresponding gene in a new page. clicking '+' icon quickly overviews the gene mapping.


 1. Transcript Details Expression Pattern [Help]   
  Transcript Mapping
  Exons Structure     

Gene id: Bb_063970F 
Gene name: IFT27
Chromosome: Sc0000024(+)
Gene locus: Sc0000024(+):1168833-1170130
Gene description: Intraflagellar transport protein 27 homolog

Transcript id: Bb_063970F 
Transcript name: IFT27
Transcript locus: Sc0000024(+):1168833-1170130

Start codon: 1168833
Stop codon: 1170128
Alternative polyA sites: Mapped to the searched transcript, containing the 5' and 3' flanking region of 1kb.
1170380, 1170607
polyA signals: ATTAAA, ATTAAA

Notes:
  GO Details    
 GO Id Ontology Term
 QuickGO:0007264  Biological Process  small GTPase mediated signal transduction 
 QuickGO:0005525  Molecular Function  GTP binding 
 QuickGO:0005622  Cellular Component  intracellular 
  Families and predicting domains and important sites 
 InterPro Id Term
 InterPro:IPR001806  Ras GTPase 
 InterPro:IPR003577  Ras small GTPase, Ras type 
 InterPro:IPR003578  Small GTPase, Rho type 
 InterPro:IPR003579  Ras small GTPase, Rab type 
 InterPro:IPR005225  Small GTP-binding protein domain 
 InterPro:IPR013753  Ras 
 InterPro:IPR020851  Small GTPase 
  KEGG 
 KEGG Id Definition
 KO:K07934   Rab-like protein 
CDS/mRNA:
  cDNA sequence ( exon splicing-sites gapped by the sympol ' / ' )     
>Bb_063970F 564bp 
ATGGTCGTACTCCGAGCTAAGTGTATCGTGGCAGGTGATTCGACAGTGGGGAAAAGCGCGCTAGTTCAG/ACGTTCCACAGTGATGGGTCCCACTTCCCCAAGAGTTACACCATGACAGAAGGTGTGGAGGTGTGTGTGAAGTCTGTCATCATCCCCGACACCAACGACACCGTGGAGCTGCTGATCTTCGACTCTGCGGGGAAGGAGATCTTCTACGACCACGTGAAGAAGAACTGGGACCACCCGTCTGTCGTGTGCCTAGTGTTCGACCTCACCAGCGAACCATCGTTTCACAG/TTGCTCCAAATGGCTGGAAAGGATTCGCTCCCAGAAGCCAGAAATTGTTCTACCCGGCGTCCTGATTGGCAACAAACTCGACCTAGAGCAGCGGAGAACGGTCACGCCGAAGTTCCCCACGGAATTCGCCTCTTCCCACGGTCTGGAGTACTTTGAGTGCTCGGCCAAGGAACAACAGAACGTAGAGGCTCCGTTTTACTACCTAGCACAAGAGTTTTACAAAATGTATCAGATGAAAGCTGAGGCTATCTCAAGCATGGCAATGTAA
Protein product:
  Amino acids sequence (deduced by the coding sequence)  
> IFT27(Bb_063970F) 188aa
MVVLRAKCIVAGDSTVGKSALVQTFHSDGSHFPKSYTMTEGVEVCVKSVIIPDTNDTVELLIFDSAGKEIFYDHVKKNWDHPSVVCLVFDLTSEPSFHSCSKWLERIRSQKPEIVLPGVLIGNKLDLEQRRTVTPKFPTEFASSHGLEYFECSAKEQQNVEAPFYYLAQEFYKMYQMKAEAISSMAM*
 

>Bb_063970F IFT27 ,Intraflagellar transport protein 27 homolog.
 
 
 
3
Augest 9, 2016. last modified
 
 
 
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