Branchiostoma belcheri haploid   [login][regist]
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Lancelet
Branchiostoma belcheri
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Datasets listed by species in the LanceletDB site*
 Species (Lancelet)  Datasets  Counts   Gbrowse   Example  Description and Notes
 B.belcheri  B.belcheri_HapV2(v7h2)_genome  5,679 (Scaffolds) chr view The chinese Belcher's lancelet genome (The reference haploid assembly v7h2, soft-masked)
 B.belcheri  B.belcheri_HapV2(v7h2)_cds  352,93 (Transcripts) chr view The non-redundant transcript set for the reference haploid assembly, including the annotated poly(A) sites identified by SAPAS method
 B.belcheri  B.belcheri_HapV2(v7h2)_proteins  352,93 (Proteins) chr view The non-redundant protein set for the reference haploid assembly
 B.belcheri  B.belcheri_v7h2_polyA_V.anguillarum-infected-intestine  519,31 (APA sites) chr view Describing APA sites, 3'-UTRs and heterogeneous cleavage sites downstream of poly(A) signals in the intestine of lancelet infected by Vibrio anguillarum or not.
     
 B.belcheri  B.belcheri_454EST_V.anguillarum-infected-intestine  223,103 (ESTs)   view ESTs from intestine of Belcher’s lancelet challenged with Vibrio anguillarum, obtained by the 454-sequencer
     
 B.belcheri  B.belcheri_454EST_intestine  170,607 (ESTs)   view ESTs from intestine of Belcher’s lancelet, obtained by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_liver  451,959 (ESTs)   view ESTs from liver of Belcher’s lancelet, obtained by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_gill  467,739 (ESTs)   view ESTs from gill of Belcher’s lancelet, obtained by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_gill-slits  928,698 (ESTs)   view ESTs from gill splits of Belcher’s lancelet, obtained by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_embryo-mix  1,097,418 (ESTs)   view ESTs from Belcher’s lancelet embryos at different developmental stages, generated by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_hepatic-diverticulums-intestines  1,097,418 (ESTs)   view ESTs from hepatic diverticulums and intestine of multiple Belcher’s individuals, generated by 454-sequencer
     
 B.belcheri  B.belcheri_454EST_xiamen-beihai-merged_adult  98,118 (ESTs)   view ESTs from Belcher’s lancelet (Beihai and Xiamen, China), generated by 454-sequencer.
  ds  
 B.belcheri  B.belcheri_sangerEST_xiamen_adult  4,074 (ESTs)   view ESTs obtained by the sanger sequencing from the unchallenged lancelets (Xiamen, China)
     
 B.tsing  B.tsing_sangerEST_qingdao_adult  24,412 (ESTs)   view ESTs from Tsing’s lancelet (Qingdao, China), obtained by Sanger sequencing
     
 B.belcheri  B.belcheri_r3_transposon_elements  875   view The transposon elements sequences
     
 B.belcheri  B.belcheri_v18h27.r3_alt_genome  2,307 (Scaffolds) chr view The chinese lancelet genome (The alternative haploid assembly v18h27, soft-masked) 
 B.belcheri  B.belcheri_v18h27.r3_alt_cds  36,552 (Transcripts) chr view The non-redundant transcript set for the alternative haploid assembly, including the annotated poly(A) sites identified by SAPAS method 
 B.belcheri  B.belcheri_v18h27.r3_alt_protein  36,552 (Proteins) chr view The non-redundant protein set for the alternative haploid assembly
 B.belcheri  B.belcheri_v18h27.r3_ref_genome  2,307 (Scaffolds) chr view The chinese lancelet genome (The reference haploid assembly v18h27, soft-masked) 
 B.belcheri  B.belcheri_v18h27.r3_ref_cds  37,646 (Transcripts) chr view The non-redundant transcript set for the reference haploid assembly, including the annotated poly(A) sites identified by SAPAS method 
 B.belcheri  B.belcheri_v18h27.r3_ref_protein  37,646 (Proteins) chr view The non-redundant protein set for the reference haploid assembly
 B.belcheri  B.belcheri_v15h11.r2_genome  3,298 (Scaffolds) chr view The chinese lancelet genome (The reference haploid assembly v15h11, soft-masked)
 B.belcheri  B.belcheri_v15h11.r2_cds  36,003 (Transcripts) chr view The non-redundant transcript set for the reference haploid assembly, including the annotated poly(A) sites identified by SAPAS method
 B.belcheri  B.belcheri_v15h11.r2_protein  36,003 (Proteins) chr view The non-redundant protein set for the reference haploid assembly
 B.floridae  B.floridae_v2.allmasked#  398 (Scaffolds) chr view The Florida lancelet genome (The reference diploid assembly version 2)
     
 B.floridae  B.floridae_v2_anno.transcripts#  28,667 (Transcripts) chr view The filtered gene models mapped to the genome
     
 B.floridae  B.floridae_v2_anno.proteins#  28,667 (Proteins) chr view The proteins corresponding to the transcripts (B.floridae_v1_anno.transcripts)
     
 B.floridae  B.floridae_v1.allmasked#  3,032 (Scaffolds) chr view The Florida lancelet genome (The reference diploid assembly version 1)
     
 B.floridae  B.floridae_v1_anno.transcripts#  50,815  (Transcripts) chr view The gene models for the reference diploid assembly
     
 B.floridae  B.floridae_v1_anno.proteins#  50,815 (Proteins) chr view The protein set for the reference diploid assembly
     
 B.floridae  B.floridae_ESTs_embryogenesis-gastrula#  262,037 (ESTs)   view ESTs from gastrula in Florida lancelet embryogenesis, obtained by Sanger sequencing
     
 B.floridae  B.floridae_mature.miRNA#  3,032 (Mature miRNAs)   view The Mature miRNA sequence set from miRBASE (A published miRNA sequences and annotation database)
     
* '+' icon unfolds more description, 'view' button supports quick access to a example query, and 'chr' button links the browsing in genome browser.
# The publicly available data sets collected.
June 16, 2018. last modified
 
 
 
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