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ChangeLog

2016-10-29
Adding new datasets prefixed "B.belcheri_v18h27.r3_alt"
Add:

Branchiostoma.belcheri_v18h27.r3_alt_genome.softmasked.fa.gz

Branchiostoma.belcheri_v18h27.r3_alt_cds.fa.gz

Branchiostoma.belcheri_v18h27.r3_alt_protein.fa.gz

Branchiostoma.belcheri_v18h27.r3_alt_annotation.gff3.gz

 

2016-4-12
Adding alternative polyadenylation (APA) sites to support for lancelet genes
The APA sites used in the normal and Vibrio anguillarum infected intestine were identified by the Sequencing Alternative Polyadenylation Sites (SAPAS) method capable of high-throughput sequencing and quantifying the 3'-ends of polyadenylated transcripts. And they were visualized to provide additional experimental support for lancelet genes.

 

2016-1-12
Adding gene expression data from RNA sequencing (RNA-Seq) to support for lancelet genes
The RNA-Seq approach was adopted to analyze the gene expression pattern in the major stages of embryogenesis (Branchiostoma belcheri), including the oosperm (0hpf), blastula (4hpf), cap-gastrula (5hpf), cup-gastrula (6hpf), anterior somite visible (10.5hpf), late neurula (20hpf),1 gill (30hpf) and larve (6dpf). These data help profile the dynamic usage of lancelet genes, in a sense, they also provide additional experimental support for lancelet genes.

 

2015-09-12
Adding new published datasets prefixed "B.floridae_"
Add: adding the released datasets involved in the lancelet (Branchiostoma floridae ).

B.floridae_v2.assembly

B.floridae_v2_anno.transcripts

B.floridae_v2_anno.proteins

B.floridae_v1.allmasked

B.floridae_v1_anno.transcripts

B.floridae_v1_anno.proteins

B.floridae_ESTs_gastrula (to support for lancelet genes)

 
2014-08-12
Adding new transcript dataset termed "B.belcheri_r3_transposon_elements"
Add: adding new transcript-dataset involved in transposon elements in chinese amphioxus (Branchiostoma belcheri).
 

2013-06-08
Adding new datasets prefixed "B.belcheri_v18h27.r3"
Add:

Branchiostoma.belcheri_v18h27.r3_ref_genome.softmasked.fa.gz

Branchiostoma.belcheri_v18h27.r3_ref_cds.fa.gz

Branchiostoma.belcheri_v18h27.r3_ref_protein.fa.gz

Branchiostoma.belcheri_v18h27.r3_ref_annotation.gff3.gz

Branchiostoma.belcheri_v18h27.r3_degenerate.fa.gz

 

2012-05-08
Adding new genome-related datasets prefixed "B.belcheri_v15h11.r2"
Add:

Branchiostoma.belcheri_v15h11.r2_genome.softmasked.fa.gz

Branchiostoma.belcheri_v15h11.r2_mRNA.fa.gz

Branchiostoma.belcheri_v15h11.r2_protein.fa.gz

Branchiostoma.belcheri_v15h11.r2_annotation.gff3.gz

 

2012-01-08
Adding new EST dataset to support for lancelet genes
Add:

B.belcheri_454EST_infected-intestine
B.belcheri_454EST_normal-intestine
B.belcheri_454EST_xiamen-beihai.merged
B.belcheri_sangerEST_xiamen
B.tsing_sangerEST_qingdao

 

2011-10-10
Adding new genome-related datasets
Add:

Branchiostoma.belcheri_HapV2_genome.fa.gz (The reference haploid assembly, soft-masked).

Branchiostoma.belcheri_degenerate_genome.fa.gz (Degenerate contigs that can not be incorporated into the assembly by the assember).

Branchiostoma.belcheri_HapV2_proteins.fa.gz (The non-redundant protein set for the reference haploid assembly).

Branchiostoma.belcheri_degenerate_proteins.fa.gz (The non-redundant protein set for degenerate contigs that can not be incorporated into the assembly by the assember).

Branchiostoma.belcheri_HapV2_cds.fa.gz (The non-redundant transcript set for the reference haploid assembly).

Branchiostoma.belcheri_degenerate_cds.fa.gz (The non-redundant transcript set for degenerate contigs that can not be incorporated into the assembly by the assember).

 

June 28, 2016. last modified
 
 
 
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